Aliases for LINC00326 Gene

Subcategory (RNA class) for LINC00326 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00326 Gene

  • Long Intergenic Non-Protein Coding RNA 326 2 3 5
  • LINC00326 2 168
  • Non-Protein Coding RNA 326 2
  • NONHSAG044869 92
  • HSALNG0053574 167
  • HSALNG0053573 167
  • NCRNA00326 3

External Ids for LINC00326 Gene

Previous HGNC Symbols for LINC00326 Gene

  • NCRNA00326

Previous GeneCards Identifiers for LINC00326 Gene

  • GC06P133411
  • GC06P133088

Summaries for LINC00326 Gene

GeneCards Summary for LINC00326 Gene

LINC00326 (Long Intergenic Non-Protein Coding RNA 326) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00326 include Epithelial Basement Membrane Dystrophy and Epithelial And Subepithelial Dystrophy.

Additional gene information for LINC00326 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00326 Gene

Genomics for LINC00326 Gene

GeneHancer (GH) Regulatory Elements for LINC00326 Gene

Promoters and enhancers for LINC00326 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J132950 Enhancer 0.8 Ensembl ENCODE 516.9 -1.9 -1890 3.2 FOXA2 BCL6 ZNF3 RARA SMARCA4 ATF2 HMG20A HNF4A SOX5 GATAD2A LINC00326 LOC105378008
GH06J132960 Enhancer 0.6 Ensembl 14.4 +6.7 6744 2 CTCF FOS CTBP1 SMC3 YY1 GATA3 MAFK RAD21 ZEB2 BHLHE40 LINC00326 RPL23AP46
GH06J132973 Enhancer 0.9 Ensembl CraniofacialAtlas 6.5 +19.2 19221 1.4 ZSCAN5C ZNF639 ZNF10 FOXA1 TRIM28 OSR2 BCL11A MYNN WT1 ZBTB17 LINC00326 RPL23AP46
GH06J133042 Enhancer 1.1 UCNEbase Ensembl 5.4 +87.2 87180 2.9 CTCF HES1 NCOR1 ZNF316 ZBTB17 MAFF RAD21 MAFK PBX2 USF1 HSALNG0053572 LINC00326 ENSG00000272428 ENSG00000286438
GH06J132967 Enhancer 0.5 Ensembl 7.4 +14.7 14744 2.8 EP300 ZSCAN5C OSR2 GATA3 SCRT1 FEZF1 CEBPB NFE2L2 ZNF362 SCRT2 LINC00326 RPL23AP46
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00326 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00326 Gene

Genomic Locations for LINC00326 Gene
chr6:132,954,257-133,107,410
(GRCh38/hg38)
Size:
153,154 bases
Orientation:
Plus strand
chr6:133,409,219-133,427,717
(GRCh37/hg19)
Size:
18,499 bases
Orientation:
Plus strand

Genomic View for LINC00326 Gene

Genes around LINC00326 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00326 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00326 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00326 Gene

Proteins for LINC00326 Gene

Post-translational modifications for LINC00326 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00326 Gene

Domains & Families for LINC00326 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00326 Gene

Function for LINC00326 Gene

Phenotypes From GWAS Catalog for LINC00326 Gene

genes like me logo Genes that share phenotypes with LINC00326: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00326

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00326 Gene

Localization for LINC00326 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00326 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00326 Gene

Pathways & Interactions for LINC00326 Gene

PathCards logo

SuperPathways for LINC00326 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00326 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00326 Gene

Drugs & Compounds for LINC00326 Gene

No Compound Related Data Available

Transcripts for LINC00326 Gene

mRNA/cDNA for LINC00326 Gene

30 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
18 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
10 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00326

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00326 Gene

No ASD Table

Relevant External Links for LINC00326 Gene

GeneLoc Exon Structure for
LINC00326

Expression for LINC00326 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00326 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00326 Gene

This gene is overexpressed in Testis (x38.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00326

SOURCE GeneReport for Unigene cluster for LINC00326 Gene:

Hs.407549
genes like me logo Genes that share expression patterns with LINC00326: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00326 Gene

Orthologs for LINC00326 Gene

Evolution for LINC00326 Gene

ENSEMBL:
Gene Tree for LINC00326 (if available)
TreeFam:
Gene Tree for LINC00326 (if available)

No data available for Orthologs for LINC00326 Gene

Paralogs for LINC00326 Gene

No data available for Paralogs for LINC00326 Gene

Variants for LINC00326 Gene

Additional dbSNP identifiers (rs#s) for LINC00326 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00326 Gene

Variant ID Type Subtype PubMed ID
nsv428154 CNV loss 18775914
nsv519475 CNV gain 19592680

Additional Variant Information for LINC00326 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00326

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00326 Gene

Disorders for LINC00326 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC00326 Gene - From: DISEASES

Disorder Aliases PubMed IDs
epithelial basement membrane dystrophy
  • corneal dystrophy, epithelial basement membrane
epithelial and subepithelial dystrophy
omodysplasia
  • omodysplasia 2
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00326

genes like me logo Genes that share disorders with LINC00326: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00326 Gene

Publications for LINC00326 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00326 Gene

Sources for LINC00326 Gene