LINC00323 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 323

GC21M041141
GIFtS:
16
See more...

Aliases for LINC00323 Gene

Subcategory (RNA class) for LINC00323 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00323 Gene

  • Long Intergenic Non-Protein Coding RNA 323 2 3 5
  • LINC00323 2 5
  • PRED42 2 3
  • Chromosome 21 Open Reading Frame 130 2
  • Non-Protein Coding RNA 323 2
  • NONHSAG032892.2 91
  • Lnc-TMPRSS2-83 165
  • HSALNG0133191 164
  • NCRNA00323 3
  • C21orf130 3
  • FLJ37173 2

External Ids for LINC00323 Gene

Previous HGNC Symbols for LINC00323 Gene

  • C21orf130
  • NCRNA00323

Previous GeneCards Identifiers for LINC00323 Gene

  • GC21M042514

Summaries for LINC00323 Gene

GeneCards Summary for LINC00323 Gene

LINC00323 (Long Intergenic Non-Protein Coding RNA 323) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00323 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LINC00323 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00323 Gene

Genomics for LINC00323 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00323 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J041166 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 606.6 -0.6 -640 5.7 CTCF PRDM10 ZNF629 ZNF692 ZNF143 ZIC2 PATZ1 EZH2 ZNF341 ZFX BACE2 LINC00323 MIR3197 PRDM15 BACE2-IT1 FAM3B
GH21J041140 Enhancer 0.8 Ensembl ENCODE 15.7 +27.1 27125 2.7 CREB1 ZBTB33 FOXA1 GTF2F1 CTCF CTBP1 PKNOX1 ZNF217 NR2F2 RFX5 LINC00323 LOC107985495 RF00017-3713 BACE2 DSCAM
GH21J041148 Enhancer 0.7 FANTOM5 Ensembl 17 +20.9 20884 1.8 KDM1A FOXA1 CTCF GATA3 ELF1 STAT1 LINC00323 BACE2 LOC107985495 RF00017-3713 DSCAM
GH21J041151 Enhancer 0.5 Ensembl 17.7 +16.1 16103 2.2 ZNF512 PRDM1 ZNF512B SPI1 NCOA3 ZNF366 LOC107985495 LINC00323 BACE2 RF00017-3713 DSCAM
GH21J041121 Enhancer 0.6 Ensembl 12 +46.6 46604 0.4 CTCF REST RAD21 ZNF444 SMC3 ZNF217 KLF17 ZNF654 ZNF324 ZNF143 RF00017-3713 piR-60051-066 LINC00323 BACE2 LOC107985495 DSCAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00323 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00323 Gene

Genomic Locations for LINC00323 Gene
chr21:41,141,493-41,168,804
(GRCh38/hg38)
Size:
27,312 bases
Orientation:
Minus strand
chr21:42,513,427-42,520,060
(GRCh37/hg19)
Size:
6,634 bases
Orientation:
Minus strand

Genomic View for LINC00323 Gene

Genes around LINC00323 on UCSC Golden Path with GeneCards custom track
LINC00323 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00323 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00323 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00323 Gene

Proteins for LINC00323 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC00323 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00323 Gene

Domains & Families for LINC00323 Gene

Gene Families for LINC00323 Gene

HGNC:

Suggested Antigen Peptide Sequences for LINC00323 Gene

GenScript: Design optimal peptide antigens:
  • PRED42 protein (Q9NSI4_HUMAN)
genes like me logo Genes that share domains with LINC00323: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00323 Gene

Function for LINC00323 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00323 Gene

Phenotypes for LINC00323 Gene

GenomeRNAi human phenotypes for LINC00323:
genes like me logo Genes that share phenotypes with LINC00323: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00323 Gene

Localization for LINC00323 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00323 gene
Compartment Confidence
peroxisome 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00323 Gene

Pathways & Interactions for LINC00323 Gene

PathCards logo

SuperPathways for LINC00323 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00323 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00323 Gene

Drugs & Compounds for LINC00323 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC00323 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00323 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077AE1A_9606 lncRNA 2095 3

Ensembl: ENST00000441268 (view in UCSC) ,

LncBook: HSALNT0273823,

LNCipedia: lnc-TMPRSS2-83:13,

URS000075E532_9606 lncRNA 2019 3

HGNC: 19720,

RefSeq: NR_024100,

LNCipedia: lnc-TMPRSS2-83:14,

URS00003EAF9C_9606 lncRNA 580 3

Ensembl: ENST00000446910 (view in UCSC) ,

LNCipedia: lnc-TMPRSS2-83:19,

NONCODE: NONHSAT082233.2,

URS0000EEE8E0_9606 lncRNA 2213 1

Ensembl: ENST00000660097 (view in UCSC) ,

URS0000EEB584_9606 lncRNA 2160 1

Ensembl: ENST00000654244 (view in UCSC) ,

LINC00323 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00323 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00323 Gene

No ASD Table

Relevant External Links for LINC00323 Gene

GeneLoc Exon Structure for
LINC00323

Expression for LINC00323 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00323 Gene

mRNA expression in normal human tissues for LINC00323 Gene
mRNA expression by GTEx for LINC00323 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00323 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x32.6) and Brain - Substantia nigra (x8.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00323

SOURCE GeneReport for Unigene cluster for LINC00323 Gene:

Hs.106234
genes like me logo Genes that share expression patterns with LINC00323: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00323 Gene

Orthologs for LINC00323 Gene

Evolution for LINC00323 Gene

ENSEMBL:
Gene Tree for LINC00323 (if available)
TreeFam:
Gene Tree for LINC00323 (if available)

No data available for Orthologs for LINC00323 Gene

Paralogs for LINC00323 Gene

No data available for Paralogs for LINC00323 Gene

Variants for LINC00323 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC00323 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00323 Gene

Variant ID Type Subtype PubMed ID
nsv587492 CNV loss 21841781
nsv7347 OTHER inversion 18451855

Additional Variant Information for LINC00323 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00323

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00323 Gene

Disorders for LINC00323 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00323 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • hht
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00323

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with LINC00323: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00323 Gene

Publications for LINC00323 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for LINC00323 gene in Mastermind

Products for LINC00323 Gene

Sources for LINC00323 Gene