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Aliases for LINC00323 Gene

Subcategory (RNA class) for LINC00323 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00323 Gene

  • Long Intergenic Non-Protein Coding RNA 323 2 3 5
  • Chromosome 21 Open Reading Frame 130 2
  • Non-Protein Coding RNA 323 2
  • NCRNA00323 3
  • C21orf130 3
  • PRED42 3

External Ids for LINC00323 Gene

Previous HGNC Symbols for LINC00323 Gene

  • C21orf130
  • NCRNA00323

Previous GeneCards Identifiers for LINC00323 Gene

  • GC21M042514

Summaries for LINC00323 Gene

GeneCards Summary for LINC00323 Gene

LINC00323 (Long Intergenic Non-Protein Coding RNA 323) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00323 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LINC00323 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00323 Gene

Genomics for LINC00323 Gene

GeneHancer (GH) Regulatory Elements for LINC00323 Gene

Promoters and enhancers for LINC00323 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J041148 Promoter/Enhancer 0.9 FANTOM5 Ensembl 609 -1.0 -968 1 CUX1 ELK1 LINC00323 BACE2 GC21M041159
GH21J041166 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 17.6 -21.3 -21332 5.6 CTCF ZNF148 SP7 KLF14 MZF1 CREB1 GLIS2 ZBTB8A PRDM10 ZIC2 BACE2 MIR3197 PRDM15 LINC00323 GC21P041172
GH21J041140 Enhancer 0.9 Ensembl ENCODE 15.9 +6.5 6454 2.7 MYC CREB1 ZBTB33 CTBP1 GTF2F1 PKNOX1 ZNF217 DPF2 NR2F2 NFIB LINC00323 YRDCP3
GH21J041151 Enhancer 0.5 Ensembl 18 -4.5 -4468 2.4 PRDM1 ZNF512 ZNF512B NCOA3 ZNF366 LINC00323 BACE2 GC21M041159
GH21J041121 Enhancer 0.6 Ensembl 12 +26.1 26132 0.4 CTCF RAD21 REST ZNF217 SMC3 KLF17 ZNF654 ZNF324 ZNF143 XRCC5 LINC00323 BACE2 YRDCP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00323 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00323 Gene

Genomic Locations for LINC00323 Gene
chr21:41,141,493-41,148,133
(GRCh38/hg38)
Size:
6,641 bases
Orientation:
Minus strand
chr21:42,513,427-42,520,060
(GRCh37/hg19)
Size:
6,634 bases
Orientation:
Minus strand

Genomic View for LINC00323 Gene

Genes around LINC00323 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00323 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00323 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00323 Gene

Proteins for LINC00323 Gene

Post-translational modifications for LINC00323 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00323 Gene

Domains & Families for LINC00323 Gene

Suggested Antigen Peptide Sequences for LINC00323 Gene

GenScript: Design optimal peptide antigens:
  • PRED42 protein (Q9NSI4_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LINC00323 Gene

Function for LINC00323 Gene

Phenotypes From GWAS Catalog for LINC00323 Gene

Phenotypes for LINC00323 Gene

genes like me logo Genes that share phenotypes with LINC00323: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00323 Gene

Localization for LINC00323 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00323 gene
Compartment Confidence
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00323 Gene

Pathways & Interactions for LINC00323 Gene

PathCards logo

SuperPathways for LINC00323 Gene

No Data Available

Interacting Proteins for LINC00323 Gene

Gene Ontology (GO) - Biological Process for LINC00323 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00323 Gene

Drugs & Compounds for LINC00323 Gene

No Compound Related Data Available

Transcripts for LINC00323 Gene

mRNA/cDNA for LINC00323 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Unigene Clusters for LINC00323 Gene

Long intergenic non-protein coding RNA 323:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00323 Gene

No ASD Table

Relevant External Links for LINC00323 Gene

GeneLoc Exon Structure for
LINC00323
ECgene alternative splicing isoforms for
LINC00323

Expression for LINC00323 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00323 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00323 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x32.6) and Brain - Substantia nigra (x8.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00323 Gene:

LINC00323

SOURCE GeneReport for Unigene cluster for LINC00323 Gene:

Hs.106234
genes like me logo Genes that share expression patterns with LINC00323: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00323 Gene

Orthologs for LINC00323 Gene

Evolution for LINC00323 Gene

ENSEMBL:
Gene Tree for LINC00323 (if available)
TreeFam:
Gene Tree for LINC00323 (if available)

No data available for Orthologs for LINC00323 Gene

Paralogs for LINC00323 Gene

No data available for Paralogs for LINC00323 Gene

Variants for LINC00323 Gene

Sequence variations from dbSNP and Humsavar for LINC00323 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000179296 -- 41,143,073(-) G/A non_coding_transcript_variant
rs1000219552 -- 41,150,010(-) G/C upstream_transcript_variant
rs1000259059 -- 41,141,281(-) T/C downstream_transcript_variant
rs1000432838 -- 41,146,207(-) C/T intron_variant
rs1000617413 -- 41,141,409(-) G/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00323 Gene

Variant ID Type Subtype PubMed ID
nsv587492 CNV loss 21841781
nsv7347 OTHER inversion 18451855

Additional Variant Information for LINC00323 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00323

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00323 Gene

Disorders for LINC00323 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00323 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • hht
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00323

genes like me logo Genes that share disorders with LINC00323: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00323 Gene

Publications for LINC00323 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00323 Gene

Sources for LINC00323 Gene

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