Aliases for LINC00322 Gene

Subcategory (RNA class) for LINC00322 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00322 Gene

  • Long Intergenic Non-Protein Coding RNA 322 2 3 5
  • LINC00322 2 5 165
  • NCRNA00322 3 4
  • C21orf136 3 4
  • Putative Uncharacterized Protein Encoded By LINC00322 4
  • Chromosome 21 Open Reading Frame 136 2
  • Non-Protein Coding RNA 322 2
  • NONHSAG032977.2 91
  • HSALNG0133403 164
  • FLJ16545 2

External Ids for LINC00322 Gene

Previous HGNC Symbols for LINC00322 Gene

  • C21orf136
  • NCRNA00322

Previous GeneCards Identifiers for LINC00322 Gene

  • GC21M044744

Summaries for LINC00322 Gene

GeneCards Summary for LINC00322 Gene

LINC00322 (Long Intergenic Non-Protein Coding RNA 322) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00322 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00322 Gene

Genomics for LINC00322 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00322 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043331 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 605.4 +0.5 526 3.7 CREB1 GATAD2A ZBTB33 TEAD4 ZNF629 TARDBP ZHX2 FOXA1 RFX1 ZIC2 LINC00322 AB372636 RRP1B WDR4 PWP2 TRAPPC10 ENSG00000184441 HSALNG0133400 SIK1 CRYAA
GH21J043323 Enhancer 1 Ensembl ENCODE dbSUPER 6.6 +10.3 10338 2.2 REST KDM1A ZNF24 ESR1 YY1 AFF1 MIER1 EHMT2 ZFHX2 RAD21 FRGCA LINC00322 HSALNG0133400 SIK1 CRYAA
GH21J043318 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.4 +13.2 13203 3.5 CREB1 ATF7 PRDM10 ZNF629 KDM1A ZNF692 JUND POLR2A PATZ1 ZNF600 SIK1 FRGCA WDR4 RRP1B HSALNG0133400 LINC00322 CRYAA
GH21J043326 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +7.0 7038 2 PKNOX1 CUX1 STAT5A TAL1 TCF12 ATF1 MEIS2 TEAD4 CBFA2T2 CBFA2T3 LINC00322 HSALNG0133400 SIK1 CRYAA
GH21J043328 Enhancer 0.5 Ensembl dbSUPER 0.7 +4.7 4738 1 ZBTB21 ZNF83 LINC00322 HSALNG0133400 SIK1 CRYAA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00322 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00322 Gene

Genomic Locations for LINC00322 Gene
chr21:43,322,209-43,333,439
(GRCh38/hg38)
Size:
11,231 bases
Orientation:
Minus strand
chr21:44,742,297-44,751,919
(GRCh37/hg19)
Size:
9,623 bases
Orientation:
Minus strand

Genomic View for LINC00322 Gene

Genes around LINC00322 on UCSC Golden Path with GeneCards custom track
LINC00322 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00322 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00322 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00322 Gene

Proteins for LINC00322 Gene

  • Protein details for LINC00322 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZN03-CU136_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00322
    Protein Accession:
    Q6ZN03

    Protein attributes for LINC00322 Gene

    Size:
    302 amino acids
    Molecular mass:
    32374 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00322 Gene

Post-translational modifications for LINC00322 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00322 Gene

Domains & Families for LINC00322 Gene

Gene Families for LINC00322 Gene

Protein Domains for LINC00322 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00322: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00322 Gene

Function for LINC00322 Gene

Phenotypes From GWAS Catalog for LINC00322 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00322 Gene

Localization for LINC00322 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00322 Gene

Pathways & Interactions for LINC00322 Gene

PathCards logo

SuperPathways for LINC00322 Gene

No Data Available

Interacting Proteins for LINC00322 Gene

Selected Interacting proteins: Q6ZN03-CU136_HUMAN for LINC00322 Gene via IID

Symbol External ID(s) Details
SRPK2

Gene Ontology (GO) - Biological Process for LINC00322 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00322 Gene

Drugs & Compounds for LINC00322 Gene

No Compound Related Data Available

Transcripts for LINC00322 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00322 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AAB0_9606 lncRNA 907 4

HGNC: 33698,

RefSeq: NR_103713,

LNCipedia: LINC00322:2,

NONCODE: NONHSAT082395.2,

URS0000788759_9606 lncRNA 699 2

Ensembl: ENST00000450205 (view in UCSC) ,

LNCipedia: LINC00322:1,

URS0000D5C084_9606 lncRNA 4820 1

LNCipedia: LINC00322:3,

URS00008BBA78_9606 lncRNA 907 1

LncBook: HSALNT0274212,

URS00009C4FDF_9606 lncRNA 699 1

NONCODE: NONHSAT191552.1,

LINC00322 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00322 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00322 Gene

No ASD Table

Relevant External Links for LINC00322 Gene

GeneLoc Exon Structure for
LINC00322

Expression for LINC00322 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00322 Gene

Protein differential expression in normal tissues from HIPED for LINC00322 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00322 Gene



Protein tissue co-expression partners for LINC00322 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00322

SOURCE GeneReport for Unigene cluster for LINC00322 Gene:

Hs.473952
genes like me logo Genes that share expression patterns with LINC00322: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00322 Gene

Orthologs for LINC00322 Gene

Evolution for LINC00322 Gene

ENSEMBL:
Gene Tree for LINC00322 (if available)
TreeFam:
Gene Tree for LINC00322 (if available)

No data available for Orthologs for LINC00322 Gene

Paralogs for LINC00322 Gene

No data available for Paralogs for LINC00322 Gene

Variants for LINC00322 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00322 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
rs2838262 - p.Ala149Thr
rs564352 - p.Leu116Phe

Additional dbSNP identifiers (rs#s) for LINC00322 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00322 Gene

Variant ID Type Subtype PubMed ID
esv2666871 CNV deletion 23128226
esv3647102 CNV loss 21293372
nsv1056684 CNV gain 25217958
nsv1059062 CNV gain 25217958
nsv1067412 CNV gain 25217958
nsv3536 CNV insertion 18451855
nsv483099 CNV gain 15286789
nsv953640 CNV deletion 24416366

Additional Variant Information for LINC00322 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00322

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00322 Gene

Disorders for LINC00322 Gene

Additional Disease Information for LINC00322

No disorders were found for LINC00322 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00322 Gene

Publications for LINC00322 Gene

  1. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen JV … Mann M (Cell 2006) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  3. SR protein kinases promote splicing of nonconsensus introns. (PMID: 26167880) Lipp JJ … Guthrie C (Nature structural & molecular biology 2015) 3
  4. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 4
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LINC00322 Gene

Sources for LINC00322 Gene