Aliases for LINC00319 Gene

Subcategory (RNA class) for LINC00319 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00319 Gene

  • Long Intergenic Non-Protein Coding RNA 319 2 3 5
  • LINC00319 2 5 165
  • PRED49 2 3
  • Chromosome 21 Open Reading Frame 125 2
  • Non-Protein Coding RNA 319 2
  • NONHSAG032985.2 91
  • NONHSAG032987.2 91
  • NONHSAG032988.2 91
  • HSALNG0133418 164
  • HSALNG0133427 164
  • NCRNA00319 3
  • C21orf125 3
  • FLJ38036 2

External Ids for LINC00319 Gene

Previous HGNC Symbols for LINC00319 Gene

  • C21orf125
  • NCRNA00319

Previous GeneCards Identifiers for LINC00319 Gene

  • GC21P044869

Summaries for LINC00319 Gene

GeneCards Summary for LINC00319 Gene

LINC00319 (Long Intergenic Non-Protein Coding RNA 319) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00319 include Lung Cancer Susceptibility 3.

Additional gene information for LINC00319 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00319 Gene

Genomics for LINC00319 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00319 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00319 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00319 Gene

Genomic Locations for LINC00319 Gene
chr21:43,444,720-43,454,101
(GRCh38/hg38)
Size:
9,382 bases
Orientation:
Plus strand
chr21:44,866,481-44,873,773
(GRCh37/hg19)
Size:
7,293 bases
Orientation:
Plus strand

Genomic View for LINC00319 Gene

Genes around LINC00319 on UCSC Golden Path with GeneCards custom track
LINC00319 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00319 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00319 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00319 Gene

Proteins for LINC00319 Gene

Post-translational modifications for LINC00319 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00319 Gene

Domains & Families for LINC00319 Gene

Gene Families for LINC00319 Gene

genes like me logo Genes that share domains with LINC00319: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00319 Gene

Function for LINC00319 Gene

Phenotypes From GWAS Catalog for LINC00319 Gene

Phenotypes for LINC00319 Gene

GenomeRNAi human phenotypes for LINC00319:
genes like me logo Genes that share phenotypes with LINC00319: view

Animal Model Products

CRISPR Products

miRNA for LINC00319 Gene

miRTarBase miRNAs that target LINC00319

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00319

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00319 Gene

Localization for LINC00319 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00319 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00319 Gene

Pathways & Interactions for LINC00319 Gene

PathCards logo

SuperPathways for LINC00319 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00319 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00319 Gene

Drugs & Compounds for LINC00319 Gene

No Compound Related Data Available

Transcripts for LINC00319 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00319 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000499971_9606 lncRNA 3507 4

HGNC: 19730,

Ensembl: ENST00000448049 (view in UCSC) ,

LNCipedia: LINC00319:2,

NONCODE: NONHSAT082408.2,

URS0000E6706E_9606 lncRNA 3164 1

Ensembl: ENST00000651768 (view in UCSC) ,

URS0000E88BAB_9606 lncRNA 3013 1

Ensembl: ENST00000342757 (view in UCSC) ,

URS0000CCE0C9_9606 lncRNA 2901 1

RefSeq: NR_152722,

URS00008BF4D2_9606 lncRNA 8516 2

LNCipedia: LINC00319:1,

NONCODE: NONHSAT082407.2,

LINC00319 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00319 Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00319

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00319 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4
SP1: -
SP2:

Relevant External Links for LINC00319 Gene

GeneLoc Exon Structure for
LINC00319

Expression for LINC00319 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00319 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00319 Gene

This gene is overexpressed in Liver (x6.2) and Pancreas (x5.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00319

SOURCE GeneReport for Unigene cluster for LINC00319 Gene:

Hs.146127
genes like me logo Genes that share expression patterns with LINC00319: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00319 Gene

Orthologs for LINC00319 Gene

Evolution for LINC00319 Gene

ENSEMBL:
Gene Tree for LINC00319 (if available)
TreeFam:
Gene Tree for LINC00319 (if available)

No data available for Orthologs for LINC00319 Gene

Paralogs for LINC00319 Gene

No data available for Paralogs for LINC00319 Gene

Variants for LINC00319 Gene

Additional dbSNP identifiers (rs#s) for LINC00319 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00319 Gene

Variant ID Type Subtype PubMed ID
dgv7871n54 CNV loss 21841781
dgv7872n54 CNV loss 21841781
esv2666871 CNV deletion 23128226
nsv1056684 CNV gain 25217958
nsv459288 CNV loss 19166990
nsv470901 CNV loss 18288195
nsv483099 CNV gain 15286789
nsv516339 CNV gain+loss 19592680
nsv587686 CNV loss 21841781
nsv828901 CNV gain 20364138
nsv953640 CNV deletion 24416366

Additional Variant Information for LINC00319 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00319

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00319 Gene

Disorders for LINC00319 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00319 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00319

genes like me logo Genes that share disorders with LINC00319: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00319 Gene

Publications for LINC00319 Gene

  1. Long intergenic non-protein coding RNA 319 aggravates lung adenocarcinoma carcinogenesis by modulating miR-450b-5p/EZH2. (PMID: 29408583) Zhang ZW … Sun CC (Gene 2018) 2 3
  2. Long Intergenic Noncoding RNA 319 (linc00319) Promotes Cell Proliferation and Invasion in Lung Cancer Cells by Directly Downregulating the Tumor Suppressor MiR-32. (PMID: 28800794) Zhou B … Li X (Oncology research 2017) 2 3
  3. LINC00319 acts as a microRNA-335-5p sponge to accelerate tumor growth and metastasis in gastric cancer by upregulating ADCY3. (PMID: 31433213) Zou J … Jie ZG (American journal of physiology. Gastrointestinal and liver physiology 2020) 3
  4. Long non-coding RNA 319 facilitates nasopharyngeal carcinoma carcinogenesis through regulation of miR-1207-5p/KLF12 axis. (PMID: 30243935) Song P … Yin SC (Gene 2019) 3
  5. LncRNA LINC00319 is associated with tumorigenesis and poor prognosis in glioma. (PMID: 31325436) Li Q … Tian H (European journal of pharmacology 2019) 3

Products for LINC00319 Gene

Sources for LINC00319 Gene