Aliases for LINC00316 Gene

Subcategory (RNA class) for LINC00316 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00316 Gene

  • Long Intergenic Non-Protein Coding RNA 316 2 3 5
  • LINC00316 2 5 165
  • PRED59 2 3
  • Chromosome 21 Open Reading Frame 111 2
  • Non-Protein Coding RNA 316 2
  • NONHSAG033074.2 91
  • HSALNG0133625 164
  • NCRNA00316 3
  • C21orf111 3

External Ids for LINC00316 Gene

Previous HGNC Symbols for LINC00316 Gene

  • C21orf111
  • NCRNA00316

Previous GeneCards Identifiers for LINC00316 Gene

  • GC21M046760
  • GC21M046858

Summaries for LINC00316 Gene

GeneCards Summary for LINC00316 Gene

LINC00316 (Long Intergenic Non-Protein Coding RNA 316) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00316 include Moyamoya Disease 1.

Additional gene information for LINC00316 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00316 Gene

Genomics for LINC00316 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around LINC00316 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00316 Gene

Genomic Locations for LINC00316 Gene
chr21:45,338,590-45,341,991
(GRCh38/hg38)
Size:
3,402 bases
Orientation:
Minus strand
chr21:46,758,505-46,761,910
(GRCh37/hg19)
Size:
3,406 bases
Orientation:
Minus strand

Genomic View for LINC00316 Gene

Genes around LINC00316 on UCSC Golden Path with GeneCards custom track
LINC00316 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00316 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00316 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00316 Gene

Proteins for LINC00316 Gene

Post-translational modifications for LINC00316 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00316 Gene

Domains & Families for LINC00316 Gene

Gene Families for LINC00316 Gene

Suggested Antigen Peptide Sequences for LINC00316 Gene

GenScript: Design optimal peptide antigens:
  • PRED59 protein (Q9NSH9_HUMAN)
genes like me logo Genes that share domains with LINC00316: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00316 Gene

Function for LINC00316 Gene

Phenotypes From GWAS Catalog for LINC00316 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00316 Gene

Localization for LINC00316 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00316 Gene

Pathways & Interactions for LINC00316 Gene

PathCards logo

SuperPathways for LINC00316 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00316 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00316 Gene

Drugs & Compounds for LINC00316 Gene

No Compound Related Data Available

Transcripts for LINC00316 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00316 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000056136A_9606 lncRNA 455 4

Ensembl: ENST00000416722 (view in UCSC) ,

LncBook: HSALNT0274638,

LNCipedia: LINC00316:1,

NONCODE: NONHSAT082952.2,

URS000075C806_9606 lncRNA 455 2

HGNC: 19723,

RefSeq: NR_103811,

URS00009B96DD_9606 lncRNA 455 2

LncBook: HSALNT0274639,

NONCODE: NONHSAT191598.1,

LINC00316 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00316 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00316 Gene

No ASD Table

Relevant External Links for LINC00316 Gene

GeneLoc Exon Structure for
LINC00316

Expression for LINC00316 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00316 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00316 Gene

This gene is overexpressed in Ovary (x6.8) and Pancreas (x4.1).

SOURCE GeneReport for Unigene cluster for LINC00316 Gene:

Hs.592162
genes like me logo Genes that share expression patterns with LINC00316: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00316 Gene

Orthologs for LINC00316 Gene

Evolution for LINC00316 Gene

ENSEMBL:
Gene Tree for LINC00316 (if available)
TreeFam:
Gene Tree for LINC00316 (if available)

No data available for Orthologs for LINC00316 Gene

Paralogs for LINC00316 Gene

No data available for Paralogs for LINC00316 Gene

Variants for LINC00316 Gene

Additional dbSNP identifiers (rs#s) for LINC00316 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00316 Gene

Variant ID Type Subtype PubMed ID
dgv537n27 CNV gain 19166990
dgv7899n54 CNV gain 21841781
dgv7900n54 CNV gain 21841781
esv2590674 CNV insertion 19546169
esv2762114 CNV gain 21179565
esv3431094 CNV duplication 20981092
nsv1057607 CNV gain 25217958
nsv470909 CNV gain 18288195
nsv518554 CNV loss 19592680
nsv520123 CNV gain 19592680
nsv820084 CNV insertion 19587683

Additional Variant Information for LINC00316 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00316

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00316 Gene

Disorders for LINC00316 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00316 Gene - From: DISEASES

Disorder Aliases PubMed IDs
moyamoya disease 1
  • mymy1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00316

genes like me logo Genes that share disorders with LINC00316: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00316 Gene

Publications for LINC00316 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for LINC00316 Gene

Sources for LINC00316 Gene