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Aliases for LINC00315 Gene

Subcategory (RNA class) for LINC00315 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00315 Gene

  • Long Intergenic Non-Protein Coding RNA 315 2 3 5
  • NCRNA00315 3 4
  • C21orf93 3 4
  • Putative Uncharacterized Protein Encoded By LINC00315 4
  • Chromosome 21 Open Reading Frame 93 2
  • Non-Protein Coding RNA 315 2

External Ids for LINC00315 Gene

Previous HGNC Symbols for LINC00315 Gene

  • C21orf93
  • NCRNA00315

Previous GeneCards Identifiers for LINC00315 Gene

  • GC21M046721
  • GC21M046818

Summaries for LINC00315 Gene

GeneCards Summary for LINC00315 Gene

LINC00315 (Long Intergenic Non-Protein Coding RNA 315) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00315 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00315 Gene

Genomics for LINC00315 Gene

GeneHancer (GH) Regulatory Elements for LINC00315 Gene

Promoters and enhancers for LINC00315 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J045304 Enhancer 0.5 ENCODE dbSUPER 628.5 +0.2 156 0.5 ZNF266 LINC00315 ENSG00000228137 MCM3AP POFUT2 ENSG00000227438 UBE2G2 MCM3AP-AS1 ENSG00000286262
GH21J045305 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 27.1 -2.9 -2873 5.2 HDGF CC2D1A CTCF ELF3 MNT CEBPG TFE3 SP1 HNF1A PPARG LINC00315 LINC00205 LOC105372838
GH21J045290 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 31 +11.2 11182 6.5 HDGF CC2D1A CTCF ELF3 AHR TFE3 ZBTB7A SP7 ELF1 SP1 PIR37034 LINC00315 LINC00205 MCM3AP-AS1 MCM3AP ENSG00000228137 LINC00316 SPATC1L ENSG00000286262
GH21J045299 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 32.6 +3.9 3916 4.1 MLLT1 GTF2F1 TRIM24 SMARCA4 GLIS2 GMEB1 DPF2 IKZF1 ZNF600 ZIC2 ENSG00000286262 LINC00315 LINC00205
GH21J045070 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 +231.2 231162 6.3 MTA3 ZFX CC2D1A CBFA2T2 ZNF148 NKRF POLR2A MLLT1 ZNF121 GTF2F1 SSR4P1 ADARB1 LOC105372836 ENSG00000184441 POFUT2 UBE2G2 PWP2 COL6A1 LINC00315 ENSG00000224413
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00315 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00315 Gene

Genomic Locations for LINC00315 Gene
chr21:45,300,245-45,305,257
(GRCh38/hg38)
Size:
5,013 bases
Orientation:
Minus strand
chr21:46,720,160-46,725,172
(GRCh37/hg19)
Size:
5,013 bases
Orientation:
Minus strand

Genomic View for LINC00315 Gene

Genes around LINC00315 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00315 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00315 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC00315 Gene

Proteins for LINC00315 Gene

  • Protein details for LINC00315 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59091-CU093_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00315
    Protein Accession:
    P59091

    Protein attributes for LINC00315 Gene

    Size:
    139 amino acids
    Molecular mass:
    15087 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00315 Gene

Post-translational modifications for LINC00315 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00315 Gene

Domains & Families for LINC00315 Gene

Protein Domains for LINC00315 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00315: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00315 Gene

Function for LINC00315 Gene

Phenotypes From GWAS Catalog for LINC00315 Gene

Phenotypes for LINC00315 Gene

genes like me logo Genes that share phenotypes with LINC00315: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00315

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00315 Gene

Localization for LINC00315 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00315 Gene

Pathways & Interactions for LINC00315 Gene

PathCards logo

SuperPathways for LINC00315 Gene

No Data Available

Interacting Proteins for LINC00315 Gene

Gene Ontology (GO) - Biological Process for LINC00315 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00315 Gene

Drugs & Compounds for LINC00315 Gene

No Compound Related Data Available

Transcripts for LINC00315 Gene

mRNA/cDNA for LINC00315 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00315 Gene

Long intergenic non-protein coding RNA 315:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00315

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00315 Gene

No ASD Table

Relevant External Links for LINC00315 Gene

GeneLoc Exon Structure for
LINC00315
ECgene alternative splicing isoforms for
LINC00315

Expression for LINC00315 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00315 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00315 Gene

This gene is overexpressed in Artery - Tibial (x10.5) and Testis (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00315 Gene:

LINC00315

SOURCE GeneReport for Unigene cluster for LINC00315 Gene:

Hs.171428

mRNA Expression by UniProt/SwissProt for LINC00315 Gene:

P59091-CU093_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expression patterns with LINC00315: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00315 Gene

Orthologs for LINC00315 Gene

Evolution for LINC00315 Gene

ENSEMBL:
Gene Tree for LINC00315 (if available)
TreeFam:
Gene Tree for LINC00315 (if available)

No data available for Orthologs for LINC00315 Gene

Paralogs for LINC00315 Gene

No data available for Paralogs for LINC00315 Gene

Variants for LINC00315 Gene

Additional Variant Information for LINC00315 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00315

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00315 Gene

Disorders for LINC00315 Gene

Additional Disease Information for LINC00315

No disorders were found for LINC00315 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00315 Gene

Publications for LINC00315 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4 58
  2. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz HJ … Yaspo ML (Nucleic acids research 2010) 3 58

Products for LINC00315 Gene

Sources for LINC00315 Gene

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