Aliases for LINC00313 Gene

Subcategory (RNA class) for LINC00313 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00313 Gene

  • Long Intergenic Non-Protein Coding RNA 313 2 3 5
  • LINC00313 2 5 165
  • NCRNA00313 3 4
  • C21orf84 3 4
  • Putative Uncharacterized Protein Encoded By LINC00313 4
  • Chromosome 21 Open Reading Frame 84 2
  • Non-Protein Coding RNA 313 2
  • NONHSAG032984.2 91
  • NONHSAG032986.2 91
  • CH507-42P11.5 3
  • HSALNG0133422 164
  • LINC01669 165

External Ids for LINC00313 Gene

Previous HGNC Symbols for LINC00313 Gene

  • C21orf84
  • NCRNA00313

Previous GeneCards Identifiers for LINC00313 Gene

  • GC21M044882
  • GC21M044883
  • GC21M043462

Summaries for LINC00313 Gene

GeneCards Summary for LINC00313 Gene

LINC00313 (Long Intergenic Non-Protein Coding RNA 313) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00313 include Lung Cancer and Brain Glioma.

Additional gene information for LINC00313 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00313 Gene

Genomics for LINC00313 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00313 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043481 Enhancer 0.3 dbSUPER 600.7 -1.8 -1787 1.2 ZBTB33 LINC00313 piR-43107-197 SIK1 H2BS1 HSF2BP
GH21J043482 Enhancer 0.2 dbSUPER 600.7 -0.8 -788 0.8 LINC00313 piR-33225-002 AATBC piR-43107-197 SIK1 H2BS1 HSF2BP
GH21J042745 Enhancer 1.1 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 4.6 +733.2 733171 3.8 PRDM10 ZFHX2 CTCF SPI1 ZNF18 RAD21 MAX EGR2 PDE9A LINC00313 PKNOX1 UBASH3A TFF2 PDE9A-AS1 piR-30289 NDUFV3
GH21J043476 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.3 2260 4.5 HNRNPL CREB1 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB piR-33225-002 SIK1 LINC00313 LOC102723380 H2BS1 HSF2BP
GH21J043460 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +17.4 17402 5.6 HNRNPL GATAD2A CTCF ATF7 REST TFE3 SOX13 NFKBIZ RCOR2 ZIC2 ENSG00000223975 LOC102723380 U2AF1 WDR4 RRP1B ENSG00000184441 PWP2 PKNOX1 TRAPPC10 LINC00313
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00313 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00313 Gene

Genomic Locations for LINC00313 Gene
chr21:43,439,575-43,480,787
(GRCh38/hg38)
Size:
41,213 bases
Orientation:
Minus strand
chr21:44,881,974-44,899,414
(GRCh37/hg19)
Size:
17,441 bases
Orientation:
Minus strand

Genomic View for LINC00313 Gene

Genes around LINC00313 on UCSC Golden Path with GeneCards custom track
LINC00313 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00313 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00313 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00313 Gene

Proteins for LINC00313 Gene

  • Protein details for LINC00313 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59037-CU084_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00313
    Protein Accession:
    P59037
    Secondary Accessions:
    • Q3KNU0

    Protein attributes for LINC00313 Gene

    Size:
    77 amino acids
    Molecular mass:
    8510 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00313 Gene

Post-translational modifications for LINC00313 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00313 Gene

Domains & Families for LINC00313 Gene

Gene Families for LINC00313 Gene

Protein Domains for LINC00313 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00313: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00313 Gene

Function for LINC00313 Gene

Phenotypes From GWAS Catalog for LINC00313 Gene

Phenotypes for LINC00313 Gene

genes like me logo Genes that share phenotypes with LINC00313: view

Animal Model Products

CRISPR Products

miRNA for LINC00313 Gene

miRTarBase miRNAs that target LINC00313

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00313

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00313 Gene

Localization for LINC00313 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00313 Gene

Pathways & Interactions for LINC00313 Gene

PathCards logo

SuperPathways for LINC00313 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00313 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00313 Gene

Drugs & Compounds for LINC00313 Gene

No Compound Related Data Available

Transcripts for LINC00313 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00313 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000462C8A_9606 lncRNA 579 4

HGNC: 16416,

RefSeq: NR_026863,

LNCipedia: LINC00313:6,

NONCODE: NONHSAT082418.2,

URS000000A300_9606 lncRNA 525 4

Ensembl: ENST00000413721 (view in UCSC) ,

LncBook: HSALNT0274264,

LNCipedia: LINC00313:24,

NONCODE: NONHSAT082420.2,

URS00000F8CE8_9606 lncRNA 448 4

Ensembl: ENST00000441283 (view in UCSC) ,

LncBook: HSALNT0274286,

LNCipedia: LINC00313:2,

NONCODE: NONHSAT082432.2,

URS0000204362_9606 lncRNA 413 4

Ensembl: ENST00000451543 (view in UCSC) , ENST00000623161 (view in UCSC) ,

LncBook: HSALNT0274265, HSALNT0274267,

LNCipedia: LINC00313:22, LINC01669:11,

NONCODE: NONHSAT082421.2,

URS0000054D5F_9606 lncRNA 345 4

Ensembl: ENST00000418516 (view in UCSC) ,

LncBook: HSALNT0274266,

LNCipedia: LINC00313:21,

NONCODE: NONHSAT082422.2,

LINC00313 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00313 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00313

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00313 Gene

No ASD Table

Relevant External Links for LINC00313 Gene

GeneLoc Exon Structure for
LINC00313

Expression for LINC00313 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00313 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00313 Gene

This gene is overexpressed in Liver (x19.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00313

SOURCE GeneReport for Unigene cluster for LINC00313 Gene:

Hs.592161

mRNA Expression by UniProt/SwissProt for LINC00313 Gene:

P59037-CU084_HUMAN
Tissue specificity: Widely expressed; not found in heart and in muscle.
genes like me logo Genes that share expression patterns with LINC00313: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00313 Gene

Orthologs for LINC00313 Gene

Evolution for LINC00313 Gene

ENSEMBL:
Gene Tree for LINC00313 (if available)
TreeFam:
Gene Tree for LINC00313 (if available)

No data available for Orthologs for LINC00313 Gene

Paralogs for LINC00313 Gene

No data available for Paralogs for LINC00313 Gene

Variants for LINC00313 Gene

Additional dbSNP identifiers (rs#s) for LINC00313 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00313 Gene

Variant ID Type Subtype PubMed ID
esv2664967 CNV deletion 23128226
esv2666871 CNV deletion 23128226
esv2723605 CNV deletion 23290073
esv2723607 CNV deletion 23290073
esv2723608 CNV deletion 23290073
esv2723609 CNV deletion 23290073
nsv1056684 CNV gain 25217958
nsv1116929 CNV deletion 24896259
nsv1126007 CNV deletion 24896259
nsv470901 CNV loss 18288195
nsv483099 CNV gain 15286789
nsv587689 CNV loss 21841781
nsv953640 CNV deletion 24416366

Additional Variant Information for LINC00313 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00313

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00313 Gene

Disorders for LINC00313 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00313 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
brain glioma
  • lower grade glioma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00313: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00313 Gene

Publications for LINC00313 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4
  2. Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer. (PMID: 26178480) Li M … Xu L (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2015) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. Downregulated long noncoding RNA LINC00313 inhibits the epithelial-mesenchymal transition, invasion, and migration of thyroid cancer cells through inhibiting the methylation of ALX4. (PMID: 31093972) Zhao X … Hu X (Journal of cellular physiology 2019) 3
  5. Long noncoding RNA LINC00313 modulates papillary thyroid cancer tumorigenesis via sponging miR-4429. (PMID: 29940766) Wu WJ … Wei XZ (Neoplasma 2018) 3

Products for LINC00313 Gene

Sources for LINC00313 Gene