Aliases for LINC00311 Gene

Subcategory (RNA class) for LINC00311 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00311 Gene

  • Long Intergenic Non-Protein Coding RNA 311 2 3 5
  • Transmembrane Protein 148 2 3
  • NCRNA00311 3 4
  • LINC00311 2 170
  • TMEM148 3 4
  • Putative Uncharacterized Protein Encoded By LINC00311 4
  • Non-Protein Coding RNA 311 2
  • HSALNG0113198 169
  • NONHSAG020184 94

External Ids for LINC00311 Gene

Previous HGNC Symbols for LINC00311 Gene

  • TMEM148
  • NCRNA00311

Previous GeneCards Identifiers for LINC00311 Gene

  • GC16P085317

Summaries for LINC00311 Gene

GeneCards Summary for LINC00311 Gene

LINC00311 (Long Intergenic Non-Protein Coding RNA 311) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00311 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00311 Gene

Genomics for LINC00311 Gene

GeneHancer (GH) Regulatory Elements for LINC00311 Gene

Promoters and enhancers for LINC00311 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00311 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00311 Gene

Genomic Locations for LINC00311 Gene
chr16:85,282,958-85,288,082
(GRCh38/hg38)
Size:
5,125 bases
Orientation:
Plus strand
chr16:85,316,564-85,321,688
(GRCh37/hg19)
Size:
5,125 bases
Orientation:
Plus strand

Genomic View for LINC00311 Gene

Genes around LINC00311 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00311 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00311 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00311 Gene

Proteins for LINC00311 Gene

  • Protein details for LINC00311 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N616-TM148_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00311
    Protein Accession:
    Q8N616

    Protein attributes for LINC00311 Gene

    Size:
    119 amino acids
    Molecular mass:
    12924 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00311 Gene

Post-translational modifications for LINC00311 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00311 Gene

Domains & Families for LINC00311 Gene

Protein Domains for LINC00311 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00311: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00311 Gene

Function for LINC00311 Gene

Phenotypes From GWAS Catalog for LINC00311 Gene

Phenotypes for LINC00311 Gene

GenomeRNAi human phenotypes for LINC00311:
genes like me logo Genes that share phenotypes with LINC00311: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00311 Gene

Localization for LINC00311 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00311 Gene

Pathways & Interactions for LINC00311 Gene

PathCards logo

SuperPathways for LINC00311 Gene

No Data Available

Interacting Proteins for LINC00311 Gene

Selected Interacting proteins: Q8N616-TM148_HUMAN for LINC00311 Gene via IID

Symbol External ID(s) Details
CD2

Gene Ontology (GO) - Biological Process for LINC00311 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00311 Gene

Drugs & Compounds for LINC00311 Gene

No Compound Related Data Available

Transcripts for LINC00311 Gene

mRNA/cDNA for LINC00311 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(5) LncBook transcripts :
(4) LNCipedia transcripts :
(7) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00311 Gene

No ASD Table

Relevant External Links for LINC00311 Gene

GeneLoc Exon Structure for
LINC00311
ECgene alternative splicing isoforms for
LINC00311

Expression for LINC00311 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00311 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00311 Gene

This gene is overexpressed in Muscle - Skeletal (x16.0).

Protein differential expression in normal tissues from HIPED for LINC00311 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00311 Gene



Protein tissue co-expression partners for LINC00311 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00311 Gene:

LINC00311

SOURCE GeneReport for Unigene cluster for LINC00311 Gene:

Hs.679002
genes like me logo Genes that share expression patterns with LINC00311: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00311 Gene

Orthologs for LINC00311 Gene

Evolution for LINC00311 Gene

ENSEMBL:
Gene Tree for LINC00311 (if available)
TreeFam:
Gene Tree for LINC00311 (if available)

No data available for Orthologs for LINC00311 Gene

Paralogs for LINC00311 Gene

No data available for Paralogs for LINC00311 Gene

Variants for LINC00311 Gene

Sequence variations from dbSNP and Humsavar for LINC00311 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000008514 -- 85,281,782(+) G/A upstream_transcript_variant
rs1000764144 -- 85,284,338(+) G/A intron_variant
rs1001025087 -- 85,288,310(+) A/G downstream_transcript_variant
rs1001398838 -- 85,287,478(+) C/T intron_variant
rs1001557760 -- 85,281,166(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00311 Gene

Variant ID Type Subtype PubMed ID
esv2662210 CNV deletion 23128226
esv2677829 CNV deletion 23128226
esv3639461 CNV loss 21293372
nsv1063498 CNV loss 25217958
nsv483044 CNV gain 15286789
nsv833312 CNV loss 17160897
nsv833313 CNV loss 17160897
nsv952062 CNV deletion 24416366

Additional Variant Information for LINC00311 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00311

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00311 Gene

Disorders for LINC00311 Gene

Additional Disease Information for LINC00311

No disorders were found for LINC00311 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00311 Gene

Publications for LINC00311 Gene

  1. LINC00311 is overexpressed in ankylosing spondylitis and predict treatment outcomes and recurrence. (PMID: 31170957) Zhong H … Zhong M (BMC musculoskeletal disorders 2019) 2 3 56
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  3. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J … Yang X (Molecular systems biology 2011) 3 56
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00311 Gene

Sources for LINC00311 Gene