Aliases for LINC00310 Gene

RNA type for LINC00310 Gene

lncRNA

Aliases for LINC00310 Gene

  • Chromosome 21 Open Reading Frame 82 (HGNC)
  • Non-Protein Coding RNA 310 (HGNC)
  • NONHSAG032733.2 (NONCODE)
  • HSALNG0132830 (LncBook)
  • HSALNG0132828 (LncBook)

External Ids for LINC00310 Gene

Previous HGNC Symbols for LINC00310 Gene

  • C21orf82
  • NCRNA00310

Previous GeneCards Identifiers for LINC00310 Gene

  • GC21P035553
  • GC21P034180

Summaries for LINC00310 Gene

GeneCards Summary for LINC00310 Gene

LINC00310 (Long Intergenic Non-Protein Coding RNA 310) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC00310 Gene

  • Metazoan signal recognition particle RNA

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC00310 Gene

Genomics for LINC00310 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00310 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034180 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 250.4 +24.6 24577 4.6 RXRA ZNF316 SOX5 NRF1 TFAP4 ZNF3 SP1 MEIS2 HLF EZH2 LINC00310 HSALNG0132833 HSALNG0132834 lnc-MRPS6-5 ENSG00000272657 SLC5A3 KCNE2
GH21J034155 Enhancer 0.8 Ensembl ENCODE 250.7 -0.4 -378 3.6 CEBPA NFIC RXRA RARA ZNF318 HNF4A ATF4 ATF2 SP1 NR2F6 LINC00310 HSALNG0132829 SLC5A3 ENSG00000272657 KCNE2
GH21J034092 Enhancer 0.5 ENCODE 6.8 -65.1 -65084 0.8 REST FOXA2 ZNF205 SPI1 MEIS2 OSR2 MZF1 SOX6 LINC00310 MRPS6 SLC5A3 HSALNG0132827 ENSG00000272657 RPS5P2 KCNE2
GH21J034190 Enhancer 1.1 Ensembl ENCODE 0.3 +32.5 32514 2.1 MYC NCOR1 ZNF592 NFIC CTCF HES1 BHLHE40 MBD2 MNT ARNT HSALNG0132833 HSALNG0132834 lnc-MRPS6-5 LINC00310 SLC5A3 ENSG00000272657 KCNE2
GH21J034185 Enhancer 0.9 Ensembl ENCODE 0.3 +28.3 28331 1.9 MYC BHLHE40 MNT FOSL2 NFE2 SKIL ZNF318 SMARCA4 RAD51 L3MBTL2 HSALNG0132833 HSALNG0132834 lnc-MRPS6-5 LINC00310 ENSG00000272657 SLC5A3 KCNE2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00310 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00310 Gene

Latest Assembly
chr21:34,157,723-34,196,532
(GRCh38/hg38)
Size:
38,810 bases
Orientation:
Plus strand

Previous Assembly
chr21:35,552,978-35,562,220
(GRCh37/hg19 by Entrez Gene)
Size:
9,243 bases
Orientation:
Plus strand

chr21:35,552,978-35,562,220
(GRCh37/hg19 by Ensembl)
Size:
9,243 bases
Orientation:
Plus strand

Genomic View for LINC00310 Gene

Genes around LINC00310 on UCSC Golden Path with GeneCards custom track
LINC00310 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00310 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00310 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00310 Gene

Proteins for LINC00310 Gene

  • Protein details for LINC00310 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59036-CU082_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00310
    Protein Accession:
    P59036
    Secondary Accessions:
    • Q52LY1

    Protein attributes for LINC00310 Gene

    Size:
    64 amino acids
    Molecular mass:
    7298 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00310 Gene

Post-translational modifications for LINC00310 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00310 Gene

Domains & Families for LINC00310 Gene

Gene Families for LINC00310 Gene

genes like me logo Genes that share domains with LINC00310: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00310 Gene

Function for LINC00310 Gene

Phenotypes From GWAS Catalog for LINC00310 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00310 Gene

Localization for LINC00310 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00310 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00310 Gene

Pathways & Interactions for LINC00310 Gene

PathCards logo

SuperPathways for LINC00310 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00310 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00310 Gene

Drugs & Compounds for LINC00310 Gene

No Compound Related Data Available

Transcripts for LINC00310 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00310 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000811DE7_9606 lncRNA 725 4

Ensembl: ENST00000630751 (view in UCSC) ,

LncBook: HSALNT0273042,

LNCipedia: LINC00310:2,

NONCODE: NONHSAT190913.1,

URS0000765B78_9606 lncRNA 637 4

Ensembl: ENST00000619549 (view in UCSC) ,

LncBook: HSALNT0273063,

LNCipedia: LINC00310:14,

NONCODE: NONHSAT190917.1,

URS0000811CDD_9606 lncRNA 2088 3

Ensembl: ENST00000430922 (view in UCSC) ,

LncBook: HSALNT0273048,

LNCipedia: LINC00310:3,

URS000075E93F_9606 lncRNA 1269 3

RefSeq: NR_027266,

LNCipedia: LINC00310:4,

NONCODE: NONHSAT081862.2,

URS0000153DC3_9606 lncRNA 910 3

Ensembl: ENST00000419881 (view in UCSC) ,

LNCipedia: LINC00310:13,

NONCODE: NONHSAT190916.1,

LINC00310 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00310 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00310 Gene

No ASD Table

Relevant External Links for LINC00310 Gene

GeneLoc Exon Structure for
LINC00310

Expression for LINC00310 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00310 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00310 Gene

This gene is overexpressed in Artery - Tibial (x9.1), Artery - Coronary (x8.4), and Artery - Aorta (x5.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00310

SOURCE GeneReport for Unigene cluster for LINC00310 Gene:

Hs.720230

mRNA Expression by UniProt/SwissProt for LINC00310 Gene:

P59036-CU082_HUMAN
Tissue specificity: Widely expressed; not found in breast.
genes like me logo Genes that share expression patterns with LINC00310: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00310 Gene

Orthologs for LINC00310 Gene

Evolution for LINC00310 Gene

ENSEMBL:
Gene Tree for LINC00310 (if available)
TreeFam:
Gene Tree for LINC00310 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00310

No data available for Orthologs for LINC00310 Gene

Paralogs for LINC00310 Gene

No data available for Paralogs for LINC00310 Gene

Variants for LINC00310 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00310 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC00310 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00310
Leiden Open Variation Database (LOVD)
LINC00310

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00310 Gene

Disorders for LINC00310 Gene

Additional Disease Information for LINC00310

No disorders were found for LINC00310 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00310 Gene

Publications for LINC00310 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. [Role of LINC00310 in the glycidyl methacrylate-induced malignant transformation of human bronchial epithelial cell]. (PMID: 33070810) Ma S … Xu J (Wei sheng yan jiu = Journal of hygiene research 2020) 3
  4. The oncogenic potentials and diagnostic significance of long non-coding RNA LINC00310 in breast cancer. (PMID: 29993199) Li J … Mo YY (Journal of cellular and molecular medicine 2018) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00310 Gene

Sources for LINC00310 Gene