Aliases for LINC00309 Gene

Data sources for LINC00309 Gene:

Subcategory (RNA class) for LINC00309 Gene

lncRNA

Aliases for LINC00309 Gene

External Ids for LINC00309 Gene

Previous HGNC Symbols for LINC00309 Gene

  • NCRNA00309

Previous GeneCards Identifiers for LINC00309 Gene

  • GC02M064414

Summaries for LINC00309 Gene

GeneCards Summary for LINC00309 Gene

LINC00309 (Long Intergenic Non-Protein Coding RNA 309) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00309 include Short Syndrome.

Additional gene information for LINC00309 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00309 Gene

Genomics for LINC00309 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00309 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00309 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00309 Gene

Latest Assembly
chr2:64,183,989-64,205,485
(GRCh38/hg38)
Size:
21,497 bases
Orientation:
Minus strand

Previous Assembly
chr2:64,412,212-64,432,619
(GRCh37/hg19 by Entrez Gene)
Size:
20,408 bases
Orientation:
Minus strand

chr2:64,412,212-64,432,619
(GRCh37/hg19 by Ensembl)
Size:
20,408 bases
Orientation:
Minus strand

Genomic View for LINC00309 Gene

Genes around LINC00309 on UCSC Golden Path with GeneCards custom track
LINC00309 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00309 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00309 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00309 Gene

Proteins for LINC00309 Gene

Post-translational modifications for LINC00309 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00309 Gene

Domains & Families for LINC00309 Gene

Gene Families for LINC00309 Gene

genes like me logo Genes that share domains with LINC00309: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00309 Gene

Function for LINC00309 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00309 Gene

Localization for LINC00309 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00309 Gene

Pathways & Interactions for LINC00309 Gene

PathCards logo

SuperPathways for LINC00309 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00309 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00309 Gene

Drugs & Compounds for LINC00309 Gene

No Compound Related Data Available

Transcripts for LINC00309 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00309 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759BFB_9606 lncRNA 3321 3

RefSeq: NR_033837,

LNCipedia: LINC00309:3,

NONCODE: NONHSAT071093.2,

URS0000103D35_9606 lncRNA 3313 2

Ensembl: ENST00000431020 (view in UCSC) ,

LNCipedia: LINC00309:2,

URS0000DB9A05_9606 lncRNA 934 1

Ensembl: ENST00000648144 (view in UCSC) ,

URS00008B5529_9606 lncRNA 291 3

LncBook: HSALNT0032624,

LNCipedia: LINC00309:5,

NONCODE: NONHSAT184750.1,

URS00008B6BC0_9606 lncRNA 3306 1

LNCipedia: LINC00309:4,

LINC00309 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00309 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00309 Gene

No ASD Table

Relevant External Links for LINC00309 Gene

GeneLoc Exon Structure for
LINC00309

Expression for LINC00309 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00309 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00309 Gene

This gene is overexpressed in Testis (x18.3) and Whole Blood (x7.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00309

SOURCE GeneReport for Unigene cluster for LINC00309 Gene:

Hs.272318
genes like me logo Genes that share expression patterns with LINC00309: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00309 Gene

Orthologs for LINC00309 Gene

Evolution for LINC00309 Gene

ENSEMBL:
Gene Tree for LINC00309 (if available)
TreeFam:
Gene Tree for LINC00309 (if available)

No data available for Orthologs for LINC00309 Gene

Paralogs for LINC00309 Gene

No data available for Paralogs for LINC00309 Gene

Variants for LINC00309 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00309 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00309 Gene

Variant ID Type Subtype PubMed ID
dgv151e55 CNV gain 17911159
dgv3861n100 CNV gain 25217958
dgv705e214 CNV gain 21293372
esv2759055 CNV gain 17122850
esv29437 CNV gain 19812545
esv3302963 CNV tandem duplication 20981092
nsv1006553 CNV gain 25217958
nsv1013132 CNV loss 25217958
nsv428396 CNV gain 18775914
nsv582126 CNV gain 21841781
nsv582127 CNV gain 21841781
nsv7313 OTHER inversion 18451855
nsv834243 CNV gain+loss 17160897
nsv9957 CNV gain 18304495

Additional Variant Information for LINC00309 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00309

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00309 Gene

Disorders for LINC00309 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00309 Gene - From: COP

Disorder Aliases PubMed IDs
short syndrome
  • short stature, hyperextensibility, hernia, ocular depression, rieger anomaly, and teething delay
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00309

genes like me logo Genes that share disorders with LINC00309: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00309 Gene

Publications for LINC00309 Gene

  1. Study of tumor-specific expression of some evolutionary new genes. (PMID: 30463107) Krukovskaya LL … Kozlov AP (Voprosy onkologii 2016) 3

Products for LINC00309 Gene

Sources for LINC00309 Gene