Aliases for LINC00307 Gene

Subcategory (RNA class) for LINC00307 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00307 Gene

  • Long Intergenic Non-Protein Coding RNA 307 2 3 5
  • LINC00307 2 168
  • Non-Protein Coding RNA 307 2
  • NONHSAG032633 92
  • HSALNG0132582 167
  • NCRNA00307 3
  • D21S2091E 3

External Ids for LINC00307 Gene

Previous HGNC Symbols for LINC00307 Gene

  • NCRNA00307

Previous GeneCards Identifiers for LINC00307 Gene

  • GC21U900437
  • GC21M031582

Summaries for LINC00307 Gene

GeneCards Summary for LINC00307 Gene

LINC00307 (Long Intergenic Non-Protein Coding RNA 307) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00307 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00307 Gene

Genomics for LINC00307 Gene

GeneHancer (GH) Regulatory Elements for LINC00307 Gene

Promoters and enhancers for LINC00307 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J030233 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 11.8 -22.7 -22731 2.6 FOS CEBPG SMARCA4 CEBPB MYC STAT3 LINC00307 KRTAP24-1 KRTAP25-1 CLDN17 CLDN8 lnc-KRTAP24-1-1
GH21J030206 Enhancer 0.7 Ensembl ENCODE 0.7 +4.6 4642 1.3 ZNF316 MAFF MAFK NFE2 MAFG NFE2L2 BACH1 EMSY LINC00307 piR-37895-093
GH21J030209 Enhancer 0.3 Ensembl 0.7 +2.1 2082 0.2 CTCF LINC00307 piR-37895-093
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00307 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00307 Gene

Genomic Locations for LINC00307 Gene
chr21:30,209,151-30,211,783
(GRCh38/hg38)
Size:
2,633 bases
Orientation:
Minus strand
chr21:31,581,469-31,584,101
(GRCh37/hg19)
Size:
2,633 bases
Orientation:
Minus strand

Genomic View for LINC00307 Gene

Genes around LINC00307 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00307 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00307 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00307 Gene

Proteins for LINC00307 Gene

Post-translational modifications for LINC00307 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00307 Gene

Domains & Families for LINC00307 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00307 Gene

Function for LINC00307 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00307 Gene

Localization for LINC00307 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00307 Gene

Pathways & Interactions for LINC00307 Gene

PathCards logo

SuperPathways for LINC00307 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00307 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00307 Gene

Drugs & Compounds for LINC00307 Gene

No Compound Related Data Available

Transcripts for LINC00307 Gene

mRNA/cDNA for LINC00307 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00307 Gene

No ASD Table

Relevant External Links for LINC00307 Gene

GeneLoc Exon Structure for
LINC00307

Expression for LINC00307 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00307 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00307

SOURCE GeneReport for Unigene cluster for LINC00307 Gene:

Hs.561028
genes like me logo Genes that share expression patterns with LINC00307: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00307 Gene

Orthologs for LINC00307 Gene

Evolution for LINC00307 Gene

ENSEMBL:
Gene Tree for LINC00307 (if available)
TreeFam:
Gene Tree for LINC00307 (if available)

No data available for Orthologs for LINC00307 Gene

Paralogs for LINC00307 Gene

No data available for Paralogs for LINC00307 Gene

Variants for LINC00307 Gene

Additional dbSNP identifiers (rs#s) for LINC00307 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00307 Gene

Variant ID Type Subtype PubMed ID
esv1036685 CNV deletion 17803354
esv997049 CNV deletion 20482838
nsv1071749 CNV deletion 25765185
nsv1132904 CNV insertion 24896259
nsv587354 CNV gain 21841781
nsv587355 CNV loss 21841781

Additional Variant Information for LINC00307 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00307

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00307 Gene

Disorders for LINC00307 Gene

Additional Disease Information for LINC00307

No disorders were found for LINC00307 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00307 Gene

Publications for LINC00307 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 54

Products for LINC00307 Gene

Sources for LINC00307 Gene