Aliases for LINC00305 Gene

Subcategory (RNA class) for LINC00305 Gene

lncRNA

Aliases for LINC00305 Gene

External Ids for LINC00305 Gene

Previous HGNC Symbols for LINC00305 Gene

  • C18orf20
  • NCRNA00305

Previous GeneCards Identifiers for LINC00305 Gene

  • GC18M061748

Summaries for LINC00305 Gene

GeneCards Summary for LINC00305 Gene

LINC00305 (Long Intergenic Non-Protein Coding RNA 305) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00305 Gene

Genomics for LINC00305 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00305 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J064134 Enhancer 0.6 Ensembl ENCODE 0.4 +14.9 14887 2.4 EP300 NFE2 NFE2L2 MAFF CREB1 LINC00305 RPL12P39 LINC01924 SERPINB8
GH18J064111 Enhancer 0.6 Ensembl ENCODE 0.3 +37.9 37887 1.2 SPI1 POLR2A DPF2 LINC00305 RPL12P39 LINC01924 SERPINB8
GH18J064116 Enhancer 0.5 Ensembl ENCODE 0.3 +31.9 31887 2.4 CEBPB POU5F1 LINC00305 RPL12P39 LINC01924 SERPINB8
GH18J064138 Enhancer 0.3 Ensembl 0.4 +10.5 10487 1.2 GATA2 POLR2A LINC00305 RPL12P39 LINC01924 SERPINB8
GH18J064085 Enhancer 0.4 Ensembl 0.2 +64.1 64087 0.8 JUND ATF2 CREB1 ATF7 RPL12P39 LINC01924 LINC00305 SERPINB8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00305 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00305 Gene

Latest Assembly
chr18:64,079,678-64,149,088
(GRCh38/hg38)
Size:
69,411 bases
Orientation:
Minus strand

Previous Assembly
chr18:61,747,243-61,816,260
(GRCh37/hg19 by Entrez Gene)
Size:
69,018 bases
Orientation:
Minus strand

chr18:61,747,243-61,816,264
(GRCh37/hg19 by Ensembl)
Size:
69,022 bases
Orientation:
Minus strand

Genomic View for LINC00305 Gene

Genes around LINC00305 on UCSC Golden Path with GeneCards custom track
LINC00305 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00305 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00305 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00305 Gene

Proteins for LINC00305 Gene

  • Protein details for LINC00305 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z4B0-CR020_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00305
    Protein Accession:
    Q7Z4B0
    Secondary Accessions:
    • Q8NHR5

    Protein attributes for LINC00305 Gene

    Size:
    112 amino acids
    Molecular mass:
    12600 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC00305 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC00305 Gene

Post-translational modifications for LINC00305 Gene

  • Glycosylation at Asn84

No data available for DME Specific Peptides for LINC00305 Gene

Domains & Families for LINC00305 Gene

Gene Families for LINC00305 Gene

Protein Domains for LINC00305 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00305: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00305 Gene

Function for LINC00305 Gene

Phenotypes From GWAS Catalog for LINC00305 Gene

Phenotypes for LINC00305 Gene

GenomeRNAi human phenotypes for LINC00305:
genes like me logo Genes that share phenotypes with LINC00305: view

CRISPR products for research

miRNA for LINC00305 Gene

miRTarBase miRNAs that target LINC00305

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00305 Gene

Localization for LINC00305 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LINC00305 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00305 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00305 Gene

Pathways & Interactions for LINC00305 Gene

PathCards logo

SuperPathways for LINC00305 Gene

No Data Available

Interacting Proteins for LINC00305 Gene

Selected Interacting proteins: Q7Z4B0-CR020_HUMAN for LINC00305 Gene via IID

Symbol External ID(s) Details
RBBP6

Gene Ontology (GO) - Biological Process for LINC00305 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00305 Gene

Drugs & Compounds for LINC00305 Gene

No Compound Related Data Available

Transcripts for LINC00305 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00305 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000251313_9606 lncRNA 873 3

Ensembl: ENST00000323355 (view in UCSC) ,

LNCipedia: LINC00305:3,

NONCODE: NONHSAT059682.2,

URS000014F422_9606 lncRNA 342 3

Ensembl: ENST00000454647 (view in UCSC) ,

LNCipedia: LINC00305:6,

NONCODE: NONHSAT059683.2,

URS000061FA3C_9606 lncRNA 217 3

Ensembl: ENST00000456505 (view in UCSC) ,

LncBook: HSALNT0252392,

LNCipedia: LINC00305:5,

URS0000EF0A45_9606 lncRNA 1340 1

Ensembl: ENST00000657385 (view in UCSC) ,

URS0000EF430E_9606 lncRNA 1333 1

Ensembl: ENST00000671534 (view in UCSC) ,

LINC00305 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00305 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00305

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00305 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b
SP1: -
SP2:

Relevant External Links for LINC00305 Gene

GeneLoc Exon Structure for
LINC00305

Expression for LINC00305 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00305 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00305 Gene

This gene is overexpressed in Testis (x43.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00305

SOURCE GeneReport for Unigene cluster for LINC00305 Gene:

Hs.567778
genes like me logo Genes that share expression patterns with LINC00305: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00305 Gene

Orthologs for LINC00305 Gene

Evolution for LINC00305 Gene

ENSEMBL:
Gene Tree for LINC00305 (if available)
TreeFam:
Gene Tree for LINC00305 (if available)

No data available for Orthologs for LINC00305 Gene

Paralogs for LINC00305 Gene

No data available for Paralogs for LINC00305 Gene

Variants for LINC00305 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00305 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00305 Gene

Variant ID Type Subtype PubMed ID
esv21739 CNV gain 19812545
esv2717208 CNV deletion 23290073
esv2717209 CNV deletion 23290073
esv3555512 CNV deletion 23714750
esv3583110 CNV loss 25503493
esv3583111 CNV loss 25503493
esv3642789 CNV gain 21293372
nsv1066552 CNV gain 25217958
nsv1067311 CNV loss 25217958
nsv1131373 CNV deletion 24896259
nsv1134724 CNV deletion 24896259
nsv131608 CNV deletion 16902084
nsv833673 CNV gain 17160897

Additional Variant Information for LINC00305 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00305

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00305 Gene

Disorders for LINC00305 Gene

Additional Disease Information for LINC00305

No disorders were found for LINC00305 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00305 Gene

Publications for LINC00305 Gene

  1. Long noncoding RNA LINC00305 promotes inflammation by activating the AHRR-NF-κB pathway in human monocytes. (PMID: 28393844) Zhang DD … Liu DP (Scientific reports 2017) 2 3
  2. Long intergenic noncoding RNA 00305 sponges miR-136 to regulate the hypoxia induced apoptosis of vascular endothelial cells. (PMID: 28763747) Zhang BY … Zhao Z (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. RBBP6 interacts with multifunctional protein YB-1 through its RING finger domain, leading to ubiquitination and proteosomal degradation of YB-1. (PMID: 18851979) Chibi M … Pugh DJ (Journal of molecular biology 2008) 3
  5. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4

Products for LINC00305 Gene

Sources for LINC00305 Gene