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Aliases for LINC00305 Gene
Data sources for LINC00305 Gene:
Subcategory (RNA class) for LINC00305 Gene
lncRNA
Aliases for LINC00305 Gene
- Long Intergenic Non-Protein Coding RNA 305 (HGNC, NCBI Entrez Gene, Ensembl)
- NCRNA00305 (NCBI Entrez Gene, UniProtKB/Swiss-Prot)
- LINC00305 (Ensembl, LNCipedia)
- C18orf20 (NCBI Entrez Gene, UniProtKB/Swiss-Prot)
- HsT1235 (HGNC, NCBI Entrez Gene)
External Ids for LINC00305 Gene
- HGNC: 28597
- NCBI Entrez Gene: 221241
- Ensembl: ENSG00000179676
- OMIM®: 617489
- UniProtKB/Swiss-Prot: Q7Z4B0
Previous HGNC Symbols for LINC00305 Gene
- C18orf20
- NCRNA00305
Previous GeneCards Identifiers for LINC00305 Gene
- GC18M061748
Summaries for LINC00305 Gene
GeneCards Summary for LINC00305 Gene
LINC00305 (Long Intergenic Non-Protein Coding RNA 305) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00305 Gene
- HGNC (28597)
- NCBI Entrez Gene (221241)
- Ensembl (ENSG00000179676)
- OMIM® (617489)
- UniProtKB/Swiss-Prot (Q7Z4B0)
- Open Targets Platform(ENSG00000179676)
- Search for LINC00305 at DataMed
- Search for LINC00305 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00305 Gene
Genomics for LINC00305 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00305 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH18J064134 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | +14.9 | 14887 | 2.4 | EP300 NFE2 NFE2L2 MAFF CREB1 | LINC00305 RPL12P39 LINC01924 SERPINB8 | |
| GH18J064111 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +37.9 | 37887 | 1.2 | SPI1 POLR2A DPF2 | LINC00305 RPL12P39 LINC01924 SERPINB8 | |
| GH18J064116 | Enhancer | 0.5 | Ensembl ENCODE | 0.3 | +31.9 | 31887 | 2.4 | CEBPB POU5F1 | LINC00305 RPL12P39 LINC01924 SERPINB8 | |
| GH18J064138 | Enhancer | 0.3 | Ensembl | 0.4 | +10.5 | 10487 | 1.2 | GATA2 POLR2A | LINC00305 RPL12P39 LINC01924 SERPINB8 | |
| GH18J064085 | Enhancer | 0.4 | Ensembl | 0.2 | +64.1 | 64087 | 0.8 | JUND ATF2 CREB1 ATF7 | RPL12P39 LINC01924 LINC00305 SERPINB8 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00305 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00305 Gene
Latest Assembly
- chr18:64,079,678-64,149,088
- (GRCh38/hg38)
- Size:
- 69,411 bases
- Orientation:
- Minus strand
Previous Assembly
- chr18:61,747,243-61,816,260
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 69,018 bases
- Orientation:
- Minus strand
- chr18:61,747,243-61,816,264
- (GRCh37/hg19 by Ensembl)
- Size:
- 69,022 bases
- Orientation:
- Minus strand
Genomic View for LINC00305 Gene
Genes around LINC00305 on UCSC Golden Path with GeneCards custom track
LINC00305 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q22.1 by HGNC
- 18q22.1 by Entrez Gene
- 18q22.1 by Ensembl
LINC00305 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00305 Gene
Proteins for LINC00305 Gene
-
Protein details for LINC00305 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q7Z4B0-CR020_HUMAN
- Recommended name:
- Putative uncharacterized protein encoded by LINC00305
- Protein Accession:
- Q7Z4B0
- Q8NHR5
Protein attributes for LINC00305 Gene
- Size:
- 112 amino acids
- Molecular mass:
- 12600 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for LINC00305 Gene
-
Glycosylation at Asn84
- NX_Q7Z4B0 (NX_Q7Z4B0-1)
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00305
- Origene Custom Protein Services for LINC00305
Assay products for research
No data available for DME Specific Peptides for LINC00305 Gene
Domains & Families for LINC00305 Gene
Gene Families for LINC00305 Gene
Protein Domains for LINC00305 Gene
- ProtoNet:
No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00305 Gene
Function for LINC00305 Gene
Phenotypes From GWAS Catalog for LINC00305 Gene
Phenotypes for LINC00305 Gene
- GenomeRNAi human phenotypes for LINC00305:
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00305 - Starting at $85 >
- * LINC00305 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00305
miRNA for LINC00305 Gene
- miRTarBase miRNAs that target LINC00305
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00305
- Browse OriGene Inhibitory RNA Products For LINC00305
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00305
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00305 - Starting at $45 >
- * LINC00305 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00305
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00305 Gene
Localization for LINC00305 Gene
Subcellular locations from UniProtKB/Swiss-Prot for LINC00305 Gene
- Secreted.
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
No data available for Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00305 Gene
Pathways & Interactions for LINC00305 Gene
No data available for Pathways by source and SIGNOR curated interactions for LINC00305 Gene
Transcripts for LINC00305 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00305 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000251313_9606 | lncRNA | 873 | 3 |
Ensembl: ENST00000323355 (view in UCSC) , LNCipedia: LINC00305:3, NONCODE: NONHSAT059682.2, |
| URS000014F422_9606 | lncRNA | 342 | 3 |
Ensembl: ENST00000454647 (view in UCSC) , LNCipedia: LINC00305:6, NONCODE: NONHSAT059683.2, |
| URS000061FA3C_9606 | lncRNA | 217 | 3 |
Ensembl: ENST00000456505 (view in UCSC) , LncBook: HSALNT0252392, LNCipedia: LINC00305:5, |
| URS0000EF0A45_9606 | lncRNA | 1340 | 1 |
Ensembl: ENST00000657385 (view in UCSC) , |
| URS0000EF430E_9606 | lncRNA | 1333 | 1 |
Ensembl: ENST00000671534 (view in UCSC) , |
LINC00305 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00305 Gene
- 1 REFSEQ mRNAs :
- 2 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00305 - Starting at $85 >
- * LINC00305 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00305
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00305
- Browse OriGene Inhibitory RNA Products For LINC00305
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00305
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00305 - Starting at $45 >
- * LINC00305 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00305
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||
| SP2: |
Relevant External Links for LINC00305 Gene
- GeneLoc Exon Structure for
- LINC00305
Expression for LINC00305 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00305 Gene
This gene is overexpressed in Testis (x43.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00305
SOURCE GeneReport for Unigene cluster for LINC00305 Gene:
Hs.567778Primer products for research
-
OriGene qPCR primer pairs for LINC00305
-
OriGene qPCR primer pairs and template standards for LINC00305
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00305 Gene
Orthologs for LINC00305 Gene
No data available for Orthologs for LINC00305 Gene
Paralogs for LINC00305 Gene
No data available for Paralogs for LINC00305 Gene
Variants for LINC00305 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv21739 | CNV | gain | 19812545 |
| esv2717208 | CNV | deletion | 23290073 |
| esv2717209 | CNV | deletion | 23290073 |
| esv3555512 | CNV | deletion | 23714750 |
| esv3583110 | CNV | loss | 25503493 |
| esv3583111 | CNV | loss | 25503493 |
| esv3642789 | CNV | gain | 21293372 |
| nsv1066552 | CNV | gain | 25217958 |
| nsv1067311 | CNV | loss | 25217958 |
| nsv1131373 | CNV | deletion | 24896259 |
| nsv1134724 | CNV | deletion | 24896259 |
| nsv131608 | CNV | deletion | 16902084 |
| nsv833673 | CNV | gain | 17160897 |
Additional Variant Information for LINC00305 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00305
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00305 Gene
Disorders for LINC00305 Gene
Additional Disease Information for LINC00305
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC00305 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00305 Gene
Publications for LINC00305 Gene
- Long noncoding RNA LINC00305 promotes inflammation by activating the AHRR-NF-κB pathway in human monocytes. (PMID: 28393844) Zhang DD … Liu DP (Scientific reports 2017) 2 3
- Long intergenic noncoding RNA 00305 sponges miR-136 to regulate the hypoxia induced apoptosis of vascular endothelial cells. (PMID: 28763747) Zhang BY … Zhao Z (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
- RBBP6 interacts with multifunctional protein YB-1 through its RING finger domain, leading to ubiquitination and proteosomal degradation of YB-1. (PMID: 18851979) Chibi M … Pugh DJ (Journal of molecular biology 2008) 3
- DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4
Products for LINC00305 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00305
- Origene Custom Protein Services for LINC00305
- Origene shrna and RNAi products in human, mouse, rat for LINC00305
- Browse OriGene Inhibitory RNA Products For LINC00305
- OriGene qPCR primer pairs for LINC00305
- OriGene qPCR primer pairs and template standards for LINC00305
- Browse CRISPR knockouts for LINC00305
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00305
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LINC00305 related products ranked by validation data
- antibodies-online: Search results for available LINC00305 related products ranked by validation data
- antibodies-online: Search results for available LINC00305 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00305
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00305
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00305
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00305
Sources for LINC00305 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB