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LINC00304 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 304

GCID:
GC16P089159
GIFtS:
21
Genes Participants
UDN Logo

Aliases for LINC00304 Gene

Subcategory (RNA class) for LINC00304 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00304 Gene

  • Long Intergenic Non-Protein Coding RNA 304 2 3 5
  • NCRNA00304 3 4
  • C16orf81 3 4
  • Chromosome 16 Open Reading Frame 81 2
  • Non-Protein Coding RNA 304 2

External Ids for LINC00304 Gene

Previous HGNC Symbols for LINC00304 Gene

  • C16orf81
  • NCRNA00304

Previous GeneCards Identifiers for LINC00304 Gene

  • GC16P089226

Summaries for LINC00304 Gene

GeneCards Summary for LINC00304 Gene

LINC00304 (Long Intergenic Non-Protein Coding RNA 304) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00304 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00304 Gene

Genomics for LINC00304 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC00304 Gene

Promoters and enhancers for LINC00304 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I089993 Enhancer 1.5 Ensembl ENCODE dbSUPER 35.7 +836.1 836101 3.5 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A ZNF2 ZBTB7B PIR44838 ENSG00000259877 AFG3L1P ANKRD11 MC1R ACSF3 TCF25 GAS8 LOC101927863 SNORD68
GH16I089558 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 19.5 +403.5 403480 7.9 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC RPL13 SNORD68 GC16P089560 GC16P089561 PIR32702 AFG3L1P ANKRD11 TCF25 ENSG00000268218 ENSG00000259877
GH16I088329 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 18.4 -826.3 -826290 6 HDGF PKNOX1 ARNT SIN3A YBX1 ZBTB7B POLR2B ZNF766 ZNF207 FOS ENSG00000259877 ACSF3 ZC3H18 BANP ENSG00000268218 ENSG00000260121 ZCCHC14 CTU2 GALNS PIEZO1
GH16I088779 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.7 -376.4 -376389 6.7 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 PIEZO1 APRT ANKRD11 SNORD68 CDT1 TRAPPC2L GALNS ENSG00000259877 RPL13 CTU2
GH16I088809 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10 -347.9 -347869 4.4 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 APRT ENSG00000259877 SNORD68 GALNS ANKRD11 LOC101927863 RPL13 ENSG00000260121 ZC3H18 ACSF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00304 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00304 Gene

Genomic Locations for LINC00304 Gene
chr16:89,159,146-89,164,245
(GRCh38/hg38)
Size:
5,100 bases
Orientation:
Plus strand
chr16:89,225,554-89,230,653
(GRCh37/hg19)

Genomic View for LINC00304 Gene

Genes around LINC00304 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00304 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00304 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00304 Gene

Proteins for LINC00304 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for LINC00304 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9R0-CP081_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00304
    Protein Accession:
    Q8N9R0

    Protein attributes for LINC00304 Gene

    Size:
    145 amino acids
    Molecular mass:
    15610 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00304 Gene

Post-translational modifications for LINC00304 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00304 Gene

Domains & Families for LINC00304 Gene

Protein Domains for LINC00304 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00304: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00304 Gene

Function for LINC00304 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00304 Gene

Phenotypes for LINC00304 Gene

GenomeRNAi human phenotypes for LINC00304:
genes like me logo Genes that share phenotypes with LINC00304: view

Animal Model Products

miRNA for LINC00304 Gene

miRTarBase miRNAs that target LINC00304

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00304 Gene

Localization for LINC00304 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00304 Gene

Pathways & Interactions for LINC00304 Gene

SuperPathways for LINC00304 Gene

PathCards logo More details on SuperPathways for LINC00304
No Data Available

Interacting Proteins for LINC00304 Gene

Gene Ontology (GO) - Biological Process for LINC00304 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00304 Gene

Drugs & Compounds for LINC00304 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00304 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC00304 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00304 Gene

Long intergenic non-protein coding RNA 304:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00304 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3
SP1: -
SP2:

Relevant External Links for LINC00304 Gene

GeneLoc Exon Structure for
LINC00304
ECgene alternative splicing isoforms for
LINC00304

Expression for LINC00304 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00304 Gene

mRNA expression in normal human tissues for LINC00304 Gene
mRNA expression by GTEx for LINC00304 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00304 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1) and Brain - Cerebellar Hemisphere (x10.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00304 Gene:

LINC00304

SOURCE GeneReport for Unigene cluster for LINC00304 Gene:

Hs.739138
genes like me logo Genes that share expression patterns with LINC00304: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00304 Gene

Orthologs for LINC00304 Gene

Evolution for LINC00304 Gene

ENSEMBL:
Gene Tree for LINC00304 (if available)
TreeFam:
Gene Tree for LINC00304 (if available)

No data available for Orthologs for LINC00304 Gene

Paralogs for LINC00304 Gene

No data available for Paralogs for LINC00304 Gene

Variants for LINC00304 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC00304 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000065246 -- 89,162,396(+) C/A/T intron_variant
rs1000175478 -- 89,157,520(+) T/A upstream_transcript_variant
rs1000337118 -- 89,161,138(+) G/A non_coding_transcript_variant
rs1000674876 -- 89,161,843(+) G/A/T intron_variant
rs1000732262 -- 89,160,702(+) C/A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00304 Gene

Variant ID Type Subtype PubMed ID
dgv3066n100 CNV gain 25217958
dgv5320n54 CNV loss 21841781
esv1010665 CNV deletion 20482838
esv2715119 CNV deletion 23290073
esv2715120 CNV deletion 23290073
esv3553896 CNV deletion 23714750
nsv1062378 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1109036 CNV deletion 24896259
nsv1141296 CNV duplication 24896259
nsv457620 CNV gain 19166990
nsv457621 CNV loss 19166990
nsv471115 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv509638 CNV insertion 20534489
nsv519104 CNV loss 19592680
nsv521217 CNV loss 19592680
nsv524478 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573720 CNV gain 21841781
nsv573723 CNV gain 21841781
nsv573724 CNV loss 21841781
nsv952072 CNV deletion 24416366

Additional Variant Information for LINC00304 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00304

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00304 Gene

Disorders for LINC00304 Gene

Additional Disease Information for LINC00304

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC00304 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00304 Gene

Publications for LINC00304 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 58

Products for LINC00304 Gene

Sources for LINC00304 Gene

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