LINC00304 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 304

GC16P089159
GIFtS:
18
See more...

Aliases for LINC00304 Gene

Data sources for LINC00304 Gene:

Subcategory (RNA class) for LINC00304 Gene

lncRNA

Aliases for LINC00304 Gene

  • Chromosome 16 Open Reading Frame 81 (HGNC)
  • Non-Protein Coding RNA 304 (HGNC)
  • NONHSAG020323.2 (NONCODE)
  • HSALNG0113581 (LncBook)
  • FLJ36701 (HGNC)

External Ids for LINC00304 Gene

Previous HGNC Symbols for LINC00304 Gene

  • C16orf81
  • NCRNA00304

Previous GeneCards Identifiers for LINC00304 Gene

  • GC16P089226

Summaries for LINC00304 Gene

GeneCards Summary for LINC00304 Gene

LINC00304 (Long Intergenic Non-Protein Coding RNA 304) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00304 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00304 Gene

Genomics for LINC00304 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00304 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00304 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00304 Gene

Latest Assembly
chr16:89,155,924-89,164,245
(GRCh38/hg38)
Size:
8,322 bases
Orientation:
Plus strand

Previous Assembly
chr16:89,225,628-89,230,083
(GRCh37/hg19 by Entrez Gene)
Size:
4,456 bases
Orientation:
Plus strand

chr16:89,225,554-89,230,653
(GRCh37/hg19 by Ensembl)
Size:
5,100 bases
Orientation:
Plus strand

Genomic View for LINC00304 Gene

Genes around LINC00304 on UCSC Golden Path with GeneCards custom track
LINC00304 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00304 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00304 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00304 Gene

Proteins for LINC00304 Gene

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  • Protein details for LINC00304 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9R0-CP081_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00304
    Protein Accession:
    Q8N9R0

    Protein attributes for LINC00304 Gene

    Size:
    145 amino acids
    Molecular mass:
    15610 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00304 Gene

Post-translational modifications for LINC00304 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00304 Gene

Domains & Families for LINC00304 Gene

Gene Families for LINC00304 Gene

HGNC:

Protein Domains for LINC00304 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00304: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00304 Gene

Function for LINC00304 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LINC00304 Gene

genes like me logo Genes that share phenotypes with LINC00304: view

CRISPR products for research

miRNA for LINC00304 Gene

miRTarBase miRNAs that target LINC00304

Inhibitory RNAs for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00304 Gene

Localization for LINC00304 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00304 Gene

Pathways & Interactions for LINC00304 Gene

PathCards logo

SuperPathways for LINC00304 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00304 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00304 Gene

Drugs & Compounds for LINC00304 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC00304 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00304 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001AE523_9606 lncRNA 2247 4

RefSeq: NR_024347,

Ensembl: ENST00000321214 (view in UCSC) ,

LNCipedia: LINC00304:4,

NONCODE: NONHSAT144474.2,

URS00001DCD85_9606 lncRNA 1097 4

Ensembl: ENST00000562248 (view in UCSC) ,

LncBook: HSALNT0235421,

LNCipedia: LINC00304:3,

NONCODE: NONHSAT144473.2,

URS00005957E2_9606 lncRNA 1864 3

Ensembl: ENST00000565008 (view in UCSC) ,

LNCipedia: LINC00304:5,

NONCODE: NONHSAT144475.2,

URS00008BDE88_9606 lncRNA 3384 3

LncBook: HSALNT0235419,

LNCipedia: LINC00304:2,

NONCODE: NONHSAT144472.2,

URS00008B4537_9606 lncRNA 3945 2

LNCipedia: LINC00304:1,

NONCODE: NONHSAT144467.2,

LINC00304 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00304 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00304 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3
SP1: -
SP2:

Relevant External Links for LINC00304 Gene

GeneLoc Exon Structure for
LINC00304

Expression for LINC00304 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00304 Gene

mRNA expression in normal human tissues for LINC00304 Gene
mRNA expression by GTEx for LINC00304 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00304 Gene

This gene is overexpressed in Brain - Cerebellum (x13.1) and Brain - Cerebellar Hemisphere (x10.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00304

SOURCE GeneReport for Unigene cluster for LINC00304 Gene:

Hs.739138
genes like me logo Genes that share expression patterns with LINC00304: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00304 Gene

Orthologs for LINC00304 Gene

Evolution for LINC00304 Gene

ENSEMBL:
Gene Tree for LINC00304 (if available)
TreeFam:
Gene Tree for LINC00304 (if available)

No data available for Orthologs for LINC00304 Gene

Paralogs for LINC00304 Gene

No data available for Paralogs for LINC00304 Gene

Variants for LINC00304 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00304 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00304 Gene

Variant ID Type Subtype PubMed ID
dgv3066n100 CNV gain 25217958
dgv5320n54 CNV loss 21841781
esv1010665 CNV deletion 20482838
esv2715119 CNV deletion 23290073
esv2715120 CNV deletion 23290073
esv3553896 CNV deletion 23714750
nsv1062378 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1109036 CNV deletion 24896259
nsv1141296 CNV duplication 24896259
nsv457620 CNV gain 19166990
nsv457621 CNV loss 19166990
nsv471115 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv509638 CNV insertion 20534489
nsv519104 CNV loss 19592680
nsv521217 CNV loss 19592680
nsv524478 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573720 CNV gain 21841781
nsv573723 CNV gain 21841781
nsv573724 CNV loss 21841781
nsv952072 CNV deletion 24416366

Additional Variant Information for LINC00304 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00304

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00304 Gene

Disorders for LINC00304 Gene

Additional Disease Information for LINC00304

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for LINC00304 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00304 Gene

Publications for LINC00304 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Androgen-responsive lncRNA LINC00304 promotes cell cycle and proliferation via regulating CCNA1. (PMID: 31012142) Zhang P … Li Y (The Prostate 2019) 3
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4

ExternalLinks

View latest publications for LINC00304 gene in Mastermind

Products for LINC00304 Gene

Sources for LINC00304 Gene