Aliases for LINC00303 Gene

Subcategory (RNA class) for LINC00303 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00303 Gene

  • Long Intergenic Non-Protein Coding RNA 303 2 3 5
  • NCRNA00303 3 4
  • LINC00303 2 170
  • C1orf157 3 4
  • Putative Uncharacterized Protein Encoded By LINC00303 4
  • Chromosome 1 Open Reading Frame 157 2
  • Non-Protein Coding RNA 303 2
  • NONHSAG004010 94
  • HSALNG0009845 169

External Ids for LINC00303 Gene

Previous HGNC Symbols for LINC00303 Gene

  • C1orf157
  • NCRNA00303

Previous GeneCards Identifiers for LINC00303 Gene

  • GC01M204002

Summaries for LINC00303 Gene

GeneCards Summary for LINC00303 Gene

LINC00303 (Long Intergenic Non-Protein Coding RNA 303) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00303 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00303 Gene

Genomics for LINC00303 Gene

GeneHancer (GH) Regulatory Elements for LINC00303 Gene

Promoters and enhancers for LINC00303 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J204040 Enhancer 0.7 Ensembl ENCODE 750.6 -0.3 -336 1.6 ZNF121 GLIS2 ZBTB8A ZEB2 PATZ1 ZSCAN5C ZFHX2 KLF17 GLIS1 ZNF398 LINC00303 RF00017-448
GH01J204037 Enhancer 0.4 Ensembl 0.6 +3.7 3664 0.8 SMARCA5 WT1 CTCF LINC00303 HSALNG0009844
GH01J204044 Enhancer 0.4 Ensembl 0.6 -4.1 -4135 2 ZNF366 MAX ATF2 SOX13 SNRPE ENSG00000231691 PLEKHA6 KRT8P29 LINC00303 RF00017-448
GH01J204043 Enhancer 0.3 Ensembl 0.6 -2.6 -2636 0.2 NR2F2 SOX13 SNRPE ENSG00000231691 PLEKHA6 LINC00303 RF00017-448
GH01J204026 Enhancer 0.3 Ensembl 0.4 +14.8 14764 0.6 ZNF146 ETNK2 HSALNG0009844 LINC00303
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00303 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00303 Gene

Genomic Locations for LINC00303 Gene
chr1:204,032,447-204,041,265
(GRCh38/hg38)
Size:
8,819 bases
Orientation:
Minus strand
chr1:204,001,575-204,010,393
(GRCh37/hg19)
Size:
8,819 bases
Orientation:
Minus strand

Genomic View for LINC00303 Gene

Genes around LINC00303 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00303 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00303 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00303 Gene

Proteins for LINC00303 Gene

  • Protein details for LINC00303 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3SY05-CA157_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00303
    Protein Accession:
    Q3SY05
    Secondary Accessions:
    • Q3SY06
    • Q8N7U1

    Protein attributes for LINC00303 Gene

    Size:
    128 amino acids
    Molecular mass:
    14562 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC00303 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC00303 Gene

Post-translational modifications for LINC00303 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00303 Gene

Domains & Families for LINC00303 Gene

Protein Domains for LINC00303 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00303: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00303 Gene

Function for LINC00303 Gene

Phenotypes From GWAS Catalog for LINC00303 Gene

genes like me logo Genes that share phenotypes with LINC00303: view

Animal Model Products

CRISPR Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00303 Gene

Localization for LINC00303 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00303 Gene

Pathways & Interactions for LINC00303 Gene

PathCards logo

SuperPathways for LINC00303 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00303 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00303 Gene

Drugs & Compounds for LINC00303 Gene

No Compound Related Data Available

Transcripts for LINC00303 Gene

mRNA/cDNA for LINC00303 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(3) LncBook transcripts :
(8) LNCipedia transcripts :
(5) NONCODE transcripts :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00303 Gene

No ASD Table

Relevant External Links for LINC00303 Gene

GeneLoc Exon Structure for
LINC00303
ECgene alternative splicing isoforms for
LINC00303

Expression for LINC00303 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00303 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00303 Gene

This gene is overexpressed in Testis (x25.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00303 Gene:

LINC00303

SOURCE GeneReport for Unigene cluster for LINC00303 Gene:

Hs.406979
genes like me logo Genes that share expression patterns with LINC00303: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00303 Gene

Orthologs for LINC00303 Gene

Evolution for LINC00303 Gene

ENSEMBL:
Gene Tree for LINC00303 (if available)
TreeFam:
Gene Tree for LINC00303 (if available)

No data available for Orthologs for LINC00303 Gene

Paralogs for LINC00303 Gene

No data available for Paralogs for LINC00303 Gene

Variants for LINC00303 Gene

Sequence variations from dbSNP and Humsavar for LINC00303 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000093840 -- 204,032,841(-) A/G non_coding_transcript_variant
rs1000309941 -- 204,036,358(-) A/G intron_variant
rs1000496707 -- 204,041,018(-) A/G intron_variant
rs1000593200 -- 204,036,098(-) G/T intron_variant
rs1001222319 -- 204,040,794(-) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00303 Gene

Variant ID Type Subtype PubMed ID
nsv1137840 CNV deletion 24896259
nsv549038 CNV loss 21841781

Additional Variant Information for LINC00303 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00303

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00303 Gene

Disorders for LINC00303 Gene

Additional Disease Information for LINC00303

No disorders were found for LINC00303 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00303 Gene

Publications for LINC00303 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00303 Gene

Sources for LINC00303 Gene