Aliases for LINC00298 Gene

Subcategory (RNA class) for LINC00298 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00298 Gene

  • Long Intergenic Non-Protein Coding RNA 298 2 3 5
  • LINC00298 2 5 165
  • NONHSAG026924.2 91
  • HSALNG0012802 164

External Ids for LINC00298 Gene

Previous GeneCards Identifiers for LINC00298 Gene

  • GC02M008066

Summaries for LINC00298 Gene

GeneCards Summary for LINC00298 Gene

LINC00298 (Long Intergenic Non-Protein Coding RNA 298) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00298 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00298 Gene

Genomics for LINC00298 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00298 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J008277 Enhancer 0.7 Ensembl ENCODE 600.7 -0.2 -215 1.6 RCOR1 IKZF1 NR2F1 WRNIP1 EBF1 MAZ TBL1XR1 TBX21 MAX ZNF687 LINC00298 HSALNG0012816 LINC00299 ID2
GH02J008278 Enhancer 0.2 Ensembl 600.7 +0.9 885 0.2 LINC00298 piR-60146-068 LINC00299 ID2
GH02J008281 Enhancer 0.7 FANTOM5 ENCODE CraniofacialAtlas 0.7 -3.8 -3783 1.8 RCOR1 HNF4A CHD2 ID2 LINC00298 HSALNG0012816 LINC00299
GH02J008299 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -28.0 -28015 21.6 SP1 ATF7 LEF1 BACH1 JUND LARP7 STAT3 ZNF143 RELA ZNF24 ID2 ID2-AS1 HSALNG0012816 LINC00298 LINC00299
GH02J008251 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +25.7 25686 3.8 BACH1 TCF12 IKZF2 TRIM22 PKNOX1 DPF2 RUNX3 GATAD2B BCL11A NBN ID2 RF00994-468 LINC00298 ENSG00000229740 LINC00299
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00298 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00298 Gene

Genomic Locations for LINC00298 Gene
chr2:7,922,425-8,278,186
(GRCh38/hg38)
Size:
355,762 bases
Orientation:
Minus strand
chr2:8,062,556-8,418,214
(GRCh37/hg19)
Size:
355,659 bases
Orientation:
Minus strand

Genomic View for LINC00298 Gene

Genes around LINC00298 on UCSC Golden Path with GeneCards custom track
LINC00298 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00298 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00298 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00298 Gene

Proteins for LINC00298 Gene

Post-translational modifications for LINC00298 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00298 Gene

Domains & Families for LINC00298 Gene

Gene Families for LINC00298 Gene

genes like me logo Genes that share domains with LINC00298: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00298 Gene

Function for LINC00298 Gene

Phenotypes From GWAS Catalog for LINC00298 Gene

Phenotypes for LINC00298 Gene

GenomeRNAi human phenotypes for LINC00298:
genes like me logo Genes that share phenotypes with LINC00298: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00298 Gene

Localization for LINC00298 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00298 Gene

Pathways & Interactions for LINC00298 Gene

PathCards logo

SuperPathways for LINC00298 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00298 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00298 Gene

Drugs & Compounds for LINC00298 Gene

No Compound Related Data Available

Transcripts for LINC00298 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00298 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DAAE8_9606 lncRNA 2236 4

Ensembl: ENST00000426969 (view in UCSC) ,

LncBook: HSALNT0026863,

LNCipedia: LINC00298:3,

NONCODE: NONHSAT068972.2,

URS00003FAD1E_9606 lncRNA 746 4

Ensembl: ENST00000456681 (view in UCSC) ,

LncBook: HSALNT0026866,

LNCipedia: LINC00298:1,

NONCODE: NONHSAT068975.2,

URS000075F048_9606 lncRNA 2165 3

HGNC: 49257,

RefSeq: NR_015405,

LNCipedia: LINC00298:6,

URS0000EF05F4_9606 lncRNA 1899 1

Ensembl: ENST00000664226 (view in UCSC) ,

URS0000EF118B_9606 lncRNA 1637 1

Ensembl: ENST00000663636 (view in UCSC) ,

LINC00298 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00298 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00298 Gene

No ASD Table

Relevant External Links for LINC00298 Gene

GeneLoc Exon Structure for
LINC00298

Expression for LINC00298 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00298 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00298 Gene

This gene is overexpressed in Brain - Amygdala (x5.5), Brain - Frontal Cortex (BA9) (x4.3), Brain - Cortex (x4.2), and Brain - Anterior cingulate cortex (BA24) (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00298

genes like me logo Genes that share expression patterns with LINC00298: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00298 Gene

Orthologs for LINC00298 Gene

Evolution for LINC00298 Gene

ENSEMBL:
Gene Tree for LINC00298 (if available)
TreeFam:
Gene Tree for LINC00298 (if available)

No data available for Orthologs for LINC00298 Gene

Paralogs for LINC00298 Gene

No data available for Paralogs for LINC00298 Gene

Variants for LINC00298 Gene

Additional dbSNP identifiers (rs#s) for LINC00298 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00298 Gene

Variant ID Type Subtype PubMed ID
esv2422245 CNV duplication 17116639
esv2719612 CNV deletion 23290073
esv34005 CNV loss 18971310
esv3575175 CNV gain 25503493

Additional Variant Information for LINC00298 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00298

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00298 Gene

Disorders for LINC00298 Gene

No disorders were found for LINC00298 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00298 Gene

Publications for LINC00298 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00298 Gene

Sources for LINC00298 Gene