Aliases for LINC00290 Gene

Subcategory (RNA class) for LINC00290 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC00290 Gene

  • Long Intergenic Non-Protein Coding RNA 290 2 3 5
  • LINC00290 2 168
  • Non-Protein Coding RNA 290 2
  • NONHSAG039430 92
  • HCG2025798 3
  • NCRNA00290 3

External Ids for LINC00290 Gene

Previous HGNC Symbols for LINC00290 Gene

  • NCRNA00290

Previous GeneCards Identifiers for LINC00290 Gene

  • GC04M181987

Summaries for LINC00290 Gene

GeneCards Summary for LINC00290 Gene

LINC00290 (Long Intergenic Non-Protein Coding RNA 290) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00290 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00290 Gene

Genomics for LINC00290 Gene

GeneHancer (GH) Regulatory Elements for LINC00290 Gene

Promoters and enhancers for LINC00290 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J181158 Enhancer 0.3 Ensembl 500.7 +0.6 649 0.2 SMARCA4 LINC00290 piR-55809-029
GH04J181168 Enhancer 0.7 UCNEbase Ensembl 0.4 -9.5 -9502 0.3 EP300 POLR2A LINC00290 ENSG00000248770 lnc-DCTD-20
GH04J181161 Enhancer 0.4 Ensembl 0.7 -3.0 -2951 0.6 ZNF316 MAFF MAFK FOS LINC00290 ENSG00000248770 lnc-DCTD-20
GH04J181166 Enhancer 0.5 Ensembl 0.4 -7.9 -7851 0.8 TEAD4 RXRA NANOG TCF12 JUN CHD7 EP300 POU5F1 POLR2A LINC00290 ENSG00000248770 lnc-DCTD-20
GH04J181143 Enhancer 0.6 Ensembl 0.4 +15.8 15849 0.2 CTCF MYC REST RAD21 TRIM22 TEAD1 SMC3 CEBPB CEBPG TCF12 piR-55809-029 LINC00290
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00290 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00290 Gene

Genomic Locations for LINC00290 Gene
chr4:181,064,089-181,159,150
(GRCh38/hg38)
Size:
95,062 bases
Orientation:
Minus strand
chr4:181,985,242-182,080,302
(GRCh37/hg19)
Size:
95,061 bases
Orientation:
Minus strand

Genomic View for LINC00290 Gene

Genes around LINC00290 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00290 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00290 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00290 Gene

Proteins for LINC00290 Gene

Post-translational modifications for LINC00290 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00290 Gene

Domains & Families for LINC00290 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00290 Gene

Function for LINC00290 Gene

Phenotypes From GWAS Catalog for LINC00290 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00290 Gene

Localization for LINC00290 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00290 Gene

Pathways & Interactions for LINC00290 Gene

PathCards logo

SuperPathways for LINC00290 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00290 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00290 Gene

Drugs & Compounds for LINC00290 Gene

No Compound Related Data Available

Transcripts for LINC00290 Gene

mRNA/cDNA for LINC00290 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
4 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00290 Gene

No ASD Table

Relevant External Links for LINC00290 Gene

GeneLoc Exon Structure for
LINC00290

Expression for LINC00290 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00290 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00290 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x10.4), Brain - Caudate (basal ganglia) (x9.7), Brain - Putamen (basal ganglia) (x9.5), Brain - Amygdala (x5.8), and Brain - Hippocampus (x4.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00290

SOURCE GeneReport for Unigene cluster for LINC00290 Gene:

Hs.535735
genes like me logo Genes that share expression patterns with LINC00290: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00290 Gene

Orthologs for LINC00290 Gene

Evolution for LINC00290 Gene

ENSEMBL:
Gene Tree for LINC00290 (if available)
TreeFam:
Gene Tree for LINC00290 (if available)

No data available for Orthologs for LINC00290 Gene

Paralogs for LINC00290 Gene

No data available for Paralogs for LINC00290 Gene

Variants for LINC00290 Gene

Additional dbSNP identifiers (rs#s) for LINC00290 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00290 Gene

Variant ID Type Subtype PubMed ID
dgv158n73 CNV deletion 24416366
dgv2960n106 CNV deletion 24896259
dgv913n67 CNV loss 20364138
dgv9410n54 CNV loss 21841781
esv1000775 CNV deletion 20482838
esv2728820 CNV deletion 23290073
esv2728821 CNV deletion 23290073
esv2728822 CNV deletion 23290073
esv28836 CNV loss 19812545
esv3296940 CNV deletion 24192839
esv3303806 CNV mobile element insertion 20981092
esv3394 CNV loss 18987735
esv3424333 CNV insertion 20981092
esv3565107 CNV deletion 23714750
esv3565109 CNV deletion 23714750
esv3603401 CNV loss 21293372
esv3603402 CNV loss 21293372
esv3894086 CNV loss 25118596
esv9004 CNV loss 19470904
nsv1016288 CNV loss 25217958
nsv1072052 CNV deletion 25765185
nsv289836 CNV deletion 16902084
nsv513184 CNV loss 21212237
nsv596296 CNV loss 21841781
nsv596303 CNV loss 21841781

Additional Variant Information for LINC00290 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00290

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00290 Gene

Disorders for LINC00290 Gene

Additional Disease Information for LINC00290

No disorders were found for LINC00290 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00290 Gene

Publications for LINC00290 Gene

  1. Genetic variations associated with postoperative recurrence in stage I non-small cell lung cancer. (PMID: 24737549) Yoon KA … Lee JS (Clinical cancer research : an official journal of the American Association for Cancer Research 2014) 3 54
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 54

Products for LINC00290 Gene

Sources for LINC00290 Gene