Aliases for LINC00273 Gene

Data sources for LINC00273 Gene:

RNA type for LINC00273 Gene

lncRNA

Aliases for LINC00273 Gene

External Ids for LINC00273 Gene

Previous HGNC Symbols for LINC00273 Gene

  • NCRNA00273

Previous GeneCards Identifiers for LINC00273 Gene

  • GC16M033964

Summaries for LINC00273 Gene

GeneCards Summary for LINC00273 Gene

LINC00273 (Long Intergenic Non-Protein Coding RNA 273) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC00273 Gene

  • microRNA mir-663
  • Eukaryotic small subunit ribosomal RNA

Additional gene information for LINC00273 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC00273 Gene

Genomics for LINC00273 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00273 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00273 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00273 Gene

Latest Assembly
chr16:34,158,584-34,163,616
(GRCh38/hg38)
Size:
5,033 bases
Orientation:
Minus strand

Previous Assembly
chr16:33,961,052-33,962,503
(GRCh37/hg19 by Ensembl)
Size:
1,452 bases
Orientation:
Minus strand

Genomic View for LINC00273 Gene

Genes around LINC00273 on UCSC Golden Path with GeneCards custom track
LINC00273 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00273 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00273 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00273 Gene

Proteins for LINC00273 Gene

Post-translational modifications for LINC00273 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00273 Gene

Domains & Families for LINC00273 Gene

Gene Families for LINC00273 Gene

genes like me logo Genes that share domains with LINC00273: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00273 Gene

Function for LINC00273 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00273 Gene

Localization for LINC00273 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00273 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00273 Gene

Pathways & Interactions for LINC00273 Gene

PathCards logo

SuperPathways for LINC00273 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00273 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00273 Gene

Drugs & Compounds for LINC00273 Gene

No Compound Related Data Available

Transcripts for LINC00273 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00273 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002B9FE9_9606 lncRNA 1452 3

Ensembl: ENST00000539813 (view in UCSC) ,

LNCipedia: LINC00273:2,

NONCODE: NONHSAT142134.2,

URS00009AE274_9606 lncRNA 1102 3

LncBook: HSALNT0230191,

LNCipedia: LINC00273:1,

NONCODE: NONHSAT142137.2,

URS0000D5D372_9606 lncRNA 1505 2

LncBook: HSALNT0230193,

LNCipedia: LINC00273:11,

URS0000D5746B_9606 lncRNA 1034 2

LncBook: HSALNT0230205,

LNCipedia: LINC00273:3,

URS0000D56EBD_9606 lncRNA 920 2

LncBook: HSALNT0230206,

LNCipedia: LINC00273:4,

LINC00273 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00273 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00273 Gene

No ASD Table

Relevant External Links for LINC00273 Gene

GeneLoc Exon Structure for
LINC00273

Expression for LINC00273 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00273 Gene

SOURCE GeneReport for Unigene cluster for LINC00273 Gene:

Hs.532675
genes like me logo Genes that share expression patterns with LINC00273: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00273 Gene

Orthologs for LINC00273 Gene

Evolution for LINC00273 Gene

ENSEMBL:
Gene Tree for LINC00273 (if available)
TreeFam:
Gene Tree for LINC00273 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00273

No data available for Orthologs for LINC00273 Gene

Paralogs for LINC00273 Gene

No data available for Paralogs for LINC00273 Gene

Variants for LINC00273 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00273 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00273 Gene

Variant ID Type Subtype PubMed ID
dgv2840n100 CNV gain 25217958
dgv2898n100 CNV gain 25217958
dgv2905n100 CNV gain 25217958
dgv2915n100 CNV gain 25217958
dgv2946n100 CNV gain 25217958
dgv2958n100 CNV loss 25217958
dgv2959n100 CNV loss 25217958
dgv473n67 CNV gain 20364138
dgv474n67 CNV gain 20364138
dgv492e199 CNV deletion 23128226
dgv49e19 OTHER inversion 19470904
dgv5067n54 CNV gain 21841781
dgv50e203 CNV gain+loss 21179565
esv2484726 CNV gain 19546169
esv26556 CNV gain 19812545
esv2714257 CNV deletion 23290073
esv2751556 CNV gain 17911159
esv32538 CNV gain 17666407
esv3638483 CNV loss 21293372
esv3638484 CNV gain 21293372
esv994638 CNV gain 20482838
nsv1077827 CNV duplication 25765185
nsv1078304 OTHER inversion 25765185
nsv1124738 CNV duplication 24896259
nsv1128746 CNV duplication 24896259
nsv1132432 CNV duplication 24896259
nsv1150441 CNV duplication 26484159
nsv527583 CNV gain 19592680
nsv572296 CNV gain 21841781
nsv572331 CNV loss 21841781
nsv572352 CNV gain 21841781
nsv827639 CNV gain 20364138
nsv833208 CNV gain 17160897
nsv952337 CNV duplication 24416366
nsv984324 CNV duplication 23825009

Additional Variant Information for LINC00273 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00273
Leiden Open Variation Database (LOVD)
LINC00273

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00273 Gene

Disorders for LINC00273 Gene

Additional Disease Information for LINC00273

No disorders were found for LINC00273 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00273 Gene

Publications for LINC00273 Gene

  1. TGFβ mediated LINC00273 upregulation sponges mir200a-3p and promotes invasion and metastasis by activating ZEB1. (PMID: 32017082) Sarkar A … Mandal DP (Journal of cellular physiology 2020) 3
  2. LncTIC1 interacts with β-catenin to drive liver TIC self-renewal and liver tumorigenesis. (PMID: 29778568) Chen Z … Zhu P (Cancer letters 2018) 3
  3. LINCRNA00273 promotes cancer metastasis and its G-Quadruplex promoter can serve as a novel target to inhibit cancer invasiveness. (PMID: 29299144) Jana S … Chatterjee S (Oncotarget 2017) 3
  4. Cloning and sequencing of a cDNA encoding for a protein specifically expressed in human testis, ovary and placenta. (PMID: 15353267) Naz RK … Rajesh C (Frontiers in bioscience : a journal and virtual library 2004) 3

Products for LINC00273 Gene

Sources for LINC00273 Gene