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Aliases for LINC00273 Gene

Subcategory (RNA class) for LINC00273 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00273 Gene

  • Long Intergenic Non-Protein Coding RNA 273 2 5
  • Non-Protein Coding RNA 273-1 2
  • Non-Protein Coding RNA 273 2

External Ids for LINC00273 Gene

Previous HGNC Symbols for LINC00273 Gene

  • NCRNA00273

Previous GeneCards Identifiers for LINC00273 Gene

  • GC16M033964

Summaries for LINC00273 Gene

GeneCards Summary for LINC00273 Gene

LINC00273 (Long Intergenic Non-Protein Coding RNA 273) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00273 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00273 Gene

Genomics for LINC00273 Gene

GeneHancer (GH) Regulatory Elements for LINC00273 Gene

Promoters and enhancers for LINC00273 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J034160 Enhancer 0.2 ENCODE 650.7 -1.2 -1247 1.6 LINC00273 RNA5-8SP2 GC16P034163 GC16P034161
GH16J034158 Enhancer 0.2 ENCODE 650.7 +1.3 1277 0.4 LINC00273 GC16P034144
GH16J034159 Enhancer 0.2 ENCODE 650.7 +1.8 1777 0.2 LINC00273 GC16P034144
GH16J034150 Enhancer 0.5 FANTOM5 ENCODE 0.4 +9.4 9377 1 LINC00273 GC16P034144
GH16J034151 Enhancer 0.4 ENCODE dbSUPER 0.4 +5.5 5530 5.6 LINC00273 GC16P034144
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00273 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00273 Gene

Genomic Locations for LINC00273 Gene
chr16:34,158,585-34,160,036
(GRCh38/hg38)
Size:
1,452 bases
Orientation:
Minus strand
chr16:33,961,052-33,962,503
(GRCh37/hg19)
Size:
1,452 bases
Orientation:
Minus strand

Genomic View for LINC00273 Gene

Genes around LINC00273 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00273 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00273 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC00273 Gene

Proteins for LINC00273 Gene

Post-translational modifications for LINC00273 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00273 Gene

Domains & Families for LINC00273 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00273 Gene

Function for LINC00273 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00273 Gene

Localization for LINC00273 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00273 Gene

Pathways & Interactions for LINC00273 Gene

SuperPathways for LINC00273 Gene

No Data Available

Interacting Proteins for LINC00273 Gene

Gene Ontology (GO) - Biological Process for LINC00273 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00273 Gene

Drugs & Compounds for LINC00273 Gene

No Compound Related Data Available

Transcripts for LINC00273 Gene

mRNA/cDNA for LINC00273 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00273 Gene

Long intergenic non-protein coding RNA 273:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00273 Gene

No ASD Table

Relevant External Links for LINC00273 Gene

GeneLoc Exon Structure for
LINC00273
ECgene alternative splicing isoforms for
LINC00273

Expression for LINC00273 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00273 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00273 Gene:

LINC00273

SOURCE GeneReport for Unigene cluster for LINC00273 Gene:

Hs.532675
genes like me logo Genes that share expression patterns with LINC00273: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00273 Gene

Orthologs for LINC00273 Gene

Evolution for LINC00273 Gene

ENSEMBL:
Gene Tree for LINC00273 (if available)
TreeFam:
Gene Tree for LINC00273 (if available)

No data available for Orthologs for LINC00273 Gene

Paralogs for LINC00273 Gene

No data available for Paralogs for LINC00273 Gene

Variants for LINC00273 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00273 Gene

Variant ID Type Subtype PubMed ID
dgv2840n100 CNV gain 25217958
dgv2898n100 CNV gain 25217958
dgv2905n100 CNV gain 25217958
dgv2915n100 CNV gain 25217958
dgv2946n100 CNV gain 25217958
dgv2958n100 CNV loss 25217958
dgv2959n100 CNV loss 25217958
dgv473n67 CNV gain 20364138
dgv474n67 CNV gain 20364138
dgv492e199 CNV deletion 23128226
dgv49e19 OTHER inversion 19470904
dgv5067n54 CNV gain 21841781
dgv50e203 CNV gain+loss 21179565
esv2484726 CNV gain 19546169
esv26556 CNV gain 19812545
esv2714257 CNV deletion 23290073
esv2751556 CNV gain 17911159
esv32538 CNV gain 17666407
esv3638483 CNV loss 21293372
esv3638484 CNV gain 21293372
esv994638 CNV gain 20482838
nsv1077827 CNV duplication 25765185
nsv1078304 OTHER inversion 25765185
nsv1124738 CNV duplication 24896259
nsv1128746 CNV duplication 24896259
nsv1132432 CNV duplication 24896259
nsv1150441 CNV duplication 26484159
nsv527583 CNV gain 19592680
nsv572296 CNV gain 21841781
nsv572331 CNV loss 21841781
nsv572352 CNV gain 21841781
nsv827639 CNV gain 20364138
nsv833208 CNV gain 17160897
nsv952337 CNV duplication 24416366
nsv984324 CNV duplication 23825009

Additional Variant Information for LINC00273 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00273

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for LINC00273 Gene

Disorders for LINC00273 Gene

Additional Disease Information for LINC00273

No disorders were found for LINC00273 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00273 Gene

Publications for LINC00273 Gene

No publications were found for LINC00273 Gene.

Products for LINC00273 Gene

Sources for LINC00273 Gene

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