Aliases for LINC00272 Gene

Data sources for LINC00272 Gene:

Subcategory (RNA class) for LINC00272 Gene

lncRNA

Aliases for LINC00272 Gene

External Ids for LINC00272 Gene

Previous HGNC Symbols for LINC00272 Gene

  • C1orf120
  • NCRNA00272

Previous GeneCards Identifiers for LINC00272 Gene

  • GC01P182378

Summaries for LINC00272 Gene

GeneCards Summary for LINC00272 Gene

LINC00272 (Long Intergenic Non-Protein Coding RNA 272) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00272 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00272 Gene

Genomics for LINC00272 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00272 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182403 Enhancer 0.6 Ensembl 250.7 -1.3 -1319 2.2 CBX1 ATF2 ZBTB21 SP7 CREB1 ZNF629 ATF3 EGR2 ZNF660 FOS HSALNG0008916 LINC00272 GLUL TEDDM1 RGSL1
GH01J182408 Enhancer 0.4 Ensembl 250.7 +1.4 1381 0.8 HNF4A SP1 HLF LINC00272 RGSL1 TEDDM1
GH01J182281 Enhancer 0.8 FANTOM5 Ensembl 4.8 -125.8 -125819 0.8 IKZF1 ZEB2 PRDM10 HDAC2 TCF12 ZNF398 MEIS2 ARID1B ATF3 CBFA2T2 piR-31937-011 piR-56341-007 GLUL RNU6-152P RPL18P2 LINC00272 HSALNG0008903 LINC01344 ZNF648 HSALNG0008888-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00272 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00272 Gene

Latest Assembly
chr1:182,407,620-182,414,816
(GRCh38/hg38)
Size:
7,197 bases
Orientation:
Plus strand

Previous Assembly
chr1:182,376,756-182,383,948
(GRCh37/hg19 by Entrez Gene)
Size:
7,193 bases
Orientation:
Plus strand

chr1:182,376,756-182,383,950
(GRCh37/hg19 by Ensembl)
Size:
7,195 bases
Orientation:
Plus strand

Genomic View for LINC00272 Gene

Genes around LINC00272 on UCSC Golden Path with GeneCards custom track
LINC00272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00272 Gene

Proteins for LINC00272 Gene

Post-translational modifications for LINC00272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00272 Gene

Domains & Families for LINC00272 Gene

Gene Families for LINC00272 Gene

genes like me logo Genes that share domains with LINC00272: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00272 Gene

Function for LINC00272 Gene

Phenotypes From GWAS Catalog for LINC00272 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00272 Gene

Localization for LINC00272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00272 Gene

Pathways & Interactions for LINC00272 Gene

PathCards logo

SuperPathways for LINC00272 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00272 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00272 Gene

Drugs & Compounds for LINC00272 Gene

No Compound Related Data Available

Transcripts for LINC00272 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00272 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001C614B_9606 lncRNA 740 4

Ensembl: ENST00000367563 (view in UCSC) ,

LncBook: HSALNT0018453,

LNCipedia: LINC00272:2,

NONCODE: NONHSAT008315.2,

URS000075BB77_9606 lncRNA 742 3

RefSeq: NR_034131,

LncBook: HSALNT0018454,

LNCipedia: LINC00272:1,

URS0000AAE62A_9606 lncRNA 435 3

Ensembl: ENST00000612603 (view in UCSC) ,

LncBook: HSALNT0018455, HSALNT0018456,

LNCipedia: LINC00272:3,

URS0000EBD4B8_9606 lncRNA 742 1

LncBook: HSALNT0289325,

URS00009B0863_9606 lncRNA 740 1

NONCODE: NONHSAT150143.1,

LINC00272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00272 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00272

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00272 Gene

No ASD Table

Relevant External Links for LINC00272 Gene

GeneLoc Exon Structure for
LINC00272

Expression for LINC00272 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00272 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00272 Gene

This gene is overexpressed in Testis (x23.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00272

SOURCE GeneReport for Unigene cluster for LINC00272 Gene:

Hs.508989
genes like me logo Genes that share expression patterns with LINC00272: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00272 Gene

Orthologs for LINC00272 Gene

Evolution for LINC00272 Gene

ENSEMBL:
Gene Tree for LINC00272 (if available)
TreeFam:
Gene Tree for LINC00272 (if available)

No data available for Orthologs for LINC00272 Gene

Paralogs for LINC00272 Gene

No data available for Paralogs for LINC00272 Gene

Variants for LINC00272 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00272 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00272 Gene

Variant ID Type Subtype PubMed ID
nsv548358 CNV gain 21841781

Additional Variant Information for LINC00272 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00272

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00272 Gene

Disorders for LINC00272 Gene

Additional Disease Information for LINC00272

No disorders were found for LINC00272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00272 Gene

Publications for LINC00272 Gene

  1. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. (PMID: 12801632) Silva AP … Camargo AA (Gene 2003) 2 3
  2. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00272 Gene

Sources for LINC00272 Gene