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Aliases for LINC00272 Gene
Data sources for LINC00272 Gene:
Subcategory (RNA class) for LINC00272 Gene
lncRNA
Aliases for LINC00272 Gene
- Long Intergenic Non-Protein Coding RNA 272 (HGNC, NCBI Entrez Gene, Ensembl)
- RP1-223H12.3 (HGNC, NCBI Entrez Gene)
- LINC00272 (Ensembl, LNCipedia)
- Chromosome 1 Open Reading Frame 120 (HGNC)
- Non-Protein Coding RNA 272 (HGNC)
- NONHSAG003663.2 (NONCODE)
- HSALNG0008917 (LncBook)
- NCRNA00272 (NCBI Entrez Gene)
- C1orf120 (NCBI Entrez Gene)
External Ids for LINC00272 Gene
- HGNC: 26898
- NCBI Entrez Gene: 388719
- Ensembl: ENSG00000203729
Previous HGNC Symbols for LINC00272 Gene
- C1orf120
- NCRNA00272
Previous GeneCards Identifiers for LINC00272 Gene
- GC01P182378
Summaries for LINC00272 Gene
GeneCards Summary for LINC00272 Gene
LINC00272 (Long Intergenic Non-Protein Coding RNA 272) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00272 Gene
- HGNC (26898)
- NCBI Entrez Gene (388719)
- Ensembl (ENSG00000203729)
- Open Targets Platform(ENSG00000203729)
- Search for LINC00272 at DataMed
- Search for LINC00272 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00272 Gene
Genomics for LINC00272 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00272 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J182403 | Enhancer | 0.6 | Ensembl | 250.7 | -1.3 | -1319 | 2.2 | CBX1 ATF2 ZBTB21 SP7 CREB1 ZNF629 ATF3 EGR2 ZNF660 FOS | HSALNG0008916 LINC00272 GLUL TEDDM1 RGSL1 | |
| GH01J182408 | Enhancer | 0.4 | Ensembl | 250.7 | +1.4 | 1381 | 0.8 | HNF4A SP1 HLF | LINC00272 RGSL1 TEDDM1 | |
| GH01J182281 | Enhancer | 0.8 | FANTOM5 Ensembl | 4.8 | -125.8 | -125819 | 0.8 | IKZF1 ZEB2 PRDM10 HDAC2 TCF12 ZNF398 MEIS2 ARID1B ATF3 CBFA2T2 | piR-31937-011 piR-56341-007 GLUL RNU6-152P RPL18P2 LINC00272 HSALNG0008903 LINC01344 ZNF648 HSALNG0008888-001 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00272 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00272 Gene
Latest Assembly
- chr1:182,407,620-182,414,816
- (GRCh38/hg38)
- Size:
- 7,197 bases
- Orientation:
- Plus strand
Previous Assembly
- chr1:182,376,756-182,383,948
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 7,193 bases
- Orientation:
- Plus strand
- chr1:182,376,756-182,383,950
- (GRCh37/hg19 by Ensembl)
- Size:
- 7,195 bases
- Orientation:
- Plus strand
Genomic View for LINC00272 Gene
Genes around LINC00272 on UCSC Golden Path with GeneCards custom track
LINC00272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1q25.3 by HGNC
- 1q25.3 by Entrez Gene
- 1q25.3 by Ensembl
LINC00272 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00272 Gene
Proteins for LINC00272 Gene
Post-translational modifications for LINC00272 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00272 Gene
Domains & Families for LINC00272 Gene
Gene Families for LINC00272 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00272 Gene
Function for LINC00272 Gene
Phenotypes From GWAS Catalog for LINC00272 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00272 - Starting at $85 >
- * LINC00272 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00272
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00272
- Browse OriGene Inhibitory RNA Products For LINC00272
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00272
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00272 - Starting at $45 >
- * LINC00272 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00272
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00272 Gene
Localization for LINC00272 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00272 Gene
Transcripts for LINC00272 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00272 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00001C614B_9606 | lncRNA | 740 | 4 |
Ensembl: ENST00000367563 (view in UCSC) , LncBook: HSALNT0018453, LNCipedia: LINC00272:2, NONCODE: NONHSAT008315.2, |
| URS000075BB77_9606 | lncRNA | 742 | 3 |
RefSeq: NR_034131, LncBook: HSALNT0018454, LNCipedia: LINC00272:1, |
| URS0000AAE62A_9606 | lncRNA | 435 | 3 |
Ensembl: ENST00000612603 (view in UCSC) , LncBook: HSALNT0018455, HSALNT0018456, LNCipedia: LINC00272:3, |
| URS0000EBD4B8_9606 | lncRNA | 742 | 1 |
LncBook: HSALNT0289325, |
| URS00009B0863_9606 | lncRNA | 740 | 1 |
NONCODE: NONHSAT150143.1, |
LINC00272 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00272 Gene
- 1 REFSEQ mRNAs :
- 2 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00272 - Starting at $85 >
- * LINC00272 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00272
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00272
- Browse OriGene Inhibitory RNA Products For LINC00272
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00272
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00272 - Starting at $45 >
- * LINC00272 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00272
Relevant External Links for LINC00272 Gene
- GeneLoc Exon Structure for
- LINC00272
Expression for LINC00272 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00272 Gene
This gene is overexpressed in Testis (x23.3).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00272
SOURCE GeneReport for Unigene cluster for LINC00272 Gene:
Hs.508989Primer products for research
-
OriGene qPCR primer pairs for LINC00272
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00272 Gene
Orthologs for LINC00272 Gene
No data available for Orthologs for LINC00272 Gene
Paralogs for LINC00272 Gene
No data available for Paralogs for LINC00272 Gene
Variants for LINC00272 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC00272 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00272
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00272 Gene
Disorders for LINC00272 Gene
Additional Disease Information for LINC00272
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC00272 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00272 Gene
Publications for LINC00272 Gene
- Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. (PMID: 12801632) Silva AP … Camargo AA (Gene 2003) 2 3
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3
- The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC00272 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00272
- Origene Custom Protein Services for LINC00272
- Origene shrna and RNAi products in human, mouse, rat for LINC00272
- Browse OriGene Inhibitory RNA Products For LINC00272
- OriGene qPCR primer pairs for LINC00272
- Browse CRISPR knockouts for LINC00272
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00272
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LINC00272 related products ranked by validation data
- antibodies-online: Search results for available LINC00272 related products ranked by validation data
- antibodies-online: Search results for available LINC00272 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LINC00272
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LINC00272
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00272
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00272
Sources for LINC00272 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB