Aliases for LINC00265 Gene

Subcategory (RNA class) for LINC00265 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00265 Gene

  • Long Intergenic Non-Protein Coding RNA 265 2 3 5
  • LINC00265 2 168
  • Non-Protein Coding RNA 265-1 2
  • Non-Protein Coding RNA 265 2
  • HSALNG0057380 167
  • NONHSAG047406 92
  • NCRNA00265-1 3
  • NCRNA00265 3

External Ids for LINC00265 Gene

Previous HGNC Symbols for LINC00265 Gene

  • NCRNA00265

Previous GeneCards Identifiers for LINC00265 Gene

  • GC07P039776

Summaries for LINC00265 Gene

GeneCards Summary for LINC00265 Gene

LINC00265 (Long Intergenic Non-Protein Coding RNA 265) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00265 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00265 Gene

Genomics for LINC00265 Gene

GeneHancer (GH) Regulatory Elements for LINC00265 Gene

Promoters and enhancers for LINC00265 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00265 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00265 Gene

Genomic Locations for LINC00265 Gene
chr7:39,699,886-39,801,259
(GRCh38/hg38)
Size:
101,374 bases
Orientation:
Plus strand
chr7:39,773,167-39,834,222
(GRCh37/hg19)
Size:
61,056 bases
Orientation:
Plus strand

Genomic View for LINC00265 Gene

Genes around LINC00265 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00265 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00265 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00265 Gene

Proteins for LINC00265 Gene

Post-translational modifications for LINC00265 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00265 Gene

Domains & Families for LINC00265 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00265 Gene

Function for LINC00265 Gene

Phenotypes From GWAS Catalog for LINC00265 Gene

Phenotypes for LINC00265 Gene

GenomeRNAi human phenotypes for LINC00265:
genes like me logo Genes that share phenotypes with LINC00265: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00265

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00265 Gene

Localization for LINC00265 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00265 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00265 Gene

Pathways & Interactions for LINC00265 Gene

PathCards logo

SuperPathways for LINC00265 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00265 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00265 Gene

Drugs & Compounds for LINC00265 Gene

No Compound Related Data Available

Transcripts for LINC00265 Gene

mRNA/cDNA for LINC00265 Gene

38 RNACentral transcripts :
2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
9 LncBook transcripts :
27 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00265

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00265 Gene

No ASD Table

Relevant External Links for LINC00265 Gene

GeneLoc Exon Structure for
LINC00265

Expression for LINC00265 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00265 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00265 Gene

This gene is overexpressed in Testis (x6.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00265

SOURCE GeneReport for Unigene cluster for LINC00265 Gene:

Hs.414183
genes like me logo Genes that share expression patterns with LINC00265: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00265 Gene

Orthologs for LINC00265 Gene

Evolution for LINC00265 Gene

ENSEMBL:
Gene Tree for LINC00265 (if available)
TreeFam:
Gene Tree for LINC00265 (if available)

No data available for Orthologs for LINC00265 Gene

Paralogs for LINC00265 Gene

No data available for Paralogs for LINC00265 Gene

Variants for LINC00265 Gene

Additional dbSNP identifiers (rs#s) for LINC00265 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00265 Gene

Variant ID Type Subtype PubMed ID
esv1003221 CNV loss 20482838
esv22190 CNV loss 19812545
esv3612916 CNV loss 21293372
nsv499730 CNV loss 21111241
nsv508451 CNV deletion 20534489
nsv5708 CNV deletion 18451855
nsv5710 CNV insertion 18451855
nsv951635 CNV deletion 24416366
nsv970820 CNV duplication 23825009

Additional Variant Information for LINC00265 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00265

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00265 Gene

Disorders for LINC00265 Gene

Additional Disease Information for LINC00265

No disorders were found for LINC00265 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00265 Gene

Publications for LINC00265 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  2. Long noncoding RNA LINC00265 predicts the prognosis of acute myeloid leukemia patients and functions as a promoter by activating PI3K-AKT pathway. (PMID: 30536332) Ma L … Yuan YF (European review for medical and pharmacological sciences 2018) 3 54
  3. Proteomic analysis reveals Hrs ubiquitin-interacting motif-mediated ubiquitin signaling in multiple cellular processes. (PMID: 19019082) Pridgeon JW … Chin LS (The FEBS journal 2009) 3 54
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 54

Products for LINC00265 Gene

Sources for LINC00265 Gene