Aliases for LINC00260 Gene

Subcategory (RNA class) for LINC00260 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC00260 Gene

  • Long Intergenic Non-Protein Coding RNA 260 2 3
  • Chromosome 1 Open Reading Frame 217 2
  • Non-Protein Coding RNA 260 2
  • HSALNG0009820 169
  • NONHSAG004002 94
  • NCRNA00260 3
  • Lnc-LAX1-1 170
  • LINC00260 2
  • C1orf217 3

External Ids for LINC00260 Gene

Previous HGNC Symbols for LINC00260 Gene

  • C1orf217
  • NCRNA00260

Previous GeneCards Identifiers for LINC00260 Gene

  • GC01U903259
  • GC01P203731
  • GC01P203732
  • GC01P203744
  • GC01P203745
  • GC01P203733
  • GC01P203735
  • GC01P203736
  • GC01P203737
  • GC01P203738
  • GC01P203739
  • GC01P203742

Summaries for LINC00260 Gene

GeneCards Summary for LINC00260 Gene

LINC00260 (Long Intergenic Non-Protein Coding RNA 260) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00260 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00260 Gene

Genomics for LINC00260 Gene

GeneHancer (GH) Regulatory Elements for LINC00260 Gene

Promoters and enhancers for LINC00260 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J203731 Enhancer 0.2 Ensembl 750.6 +1.3 1325 1.4 LINC00260 LAX1 ATP2B4 OPTC PRELP LOC102723543
GH01J203733 Enhancer 0.6 Ensembl 0.6 +2.6 2625 0.4 L3MBTL2 BACH1 IKZF1 PKNOX1 NFE2 MGA ZBTB11 ZNF766 MAFG NR2C2 LAX1 ATP2B4 OPTC PRELP LINC00260 LOC102723543
GH01J203742 Enhancer 0.6 ENCODE dbSUPER 0.4 +13.4 13423 2.2 RELA RUNX3 EBF1 LOC102723543 ADORA1 ENSG00000229652 FMOD LINC00260 ATP2B4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00260 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00260 Gene

Genomic Locations for LINC00260 Gene
chr1:203,730,576-203,731,853
(GRCh38/hg38)
Size:
1,278 bases
Orientation:
Plus strand

Genomic View for LINC00260 Gene

Genes around LINC00260 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00260 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00260 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00260 Gene

Proteins for LINC00260 Gene

Post-translational modifications for LINC00260 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00260 Gene

Domains & Families for LINC00260 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00260 Gene

Function for LINC00260 Gene

Phenotypes From GWAS Catalog for LINC00260 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00260 Gene

Localization for LINC00260 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00260 Gene

Pathways & Interactions for LINC00260 Gene

PathCards logo

SuperPathways for LINC00260 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00260 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00260 Gene

Drugs & Compounds for LINC00260 Gene

No Compound Related Data Available

Transcripts for LINC00260 Gene

mRNA/cDNA for LINC00260 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) RNACentral transcripts :
(2) LNCipedia transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00260 Gene

No ASD Table

Relevant External Links for LINC00260 Gene

GeneLoc Exon Structure for
LINC00260
ECgene alternative splicing isoforms for
LINC00260

Expression for LINC00260 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00260 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00260 Gene:

LINC00260

SOURCE GeneReport for Unigene cluster for LINC00260 Gene:

Hs.661178
genes like me logo Genes that share expression patterns with LINC00260: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00260 Gene

Orthologs for LINC00260 Gene

No data available for Orthologs and Evolution for LINC00260 Gene

Paralogs for LINC00260 Gene

No data available for Paralogs for LINC00260 Gene

Variants for LINC00260 Gene

Sequence variations from dbSNP and Humsavar for LINC00260 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1003308711 -- 203,730,119(+) C/T upstream_transcript_variant
rs1003424709 -- 203,729,780(+) C/T upstream_transcript_variant
rs1004881235 -- 203,729,679(+) G/A upstream_transcript_variant
rs1005435211 -- 203,731,133(+) C/T non_coding_transcript_variant
rs1005550025 -- 203,730,858(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00260 Gene

Variant ID Type Subtype PubMed ID
nsv467994 CNV loss 19166990
nsv549007 CNV loss 21841781

Additional Variant Information for LINC00260 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00260

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00260 Gene

Disorders for LINC00260 Gene

Additional Disease Information for LINC00260

No disorders were found for LINC00260 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00260 Gene

Publications for LINC00260 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56
  2. Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor. (PMID: 27229929) Daakour S … Twizere JC (BMC cancer 2016) 3 56

Products for LINC00260 Gene

Sources for LINC00260 Gene