Aliases for LINC00254 Gene

Subcategory (RNA class) for LINC00254 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LINC00254 Gene

  • Long Intergenic Non-Protein Coding RNA 254 2 3 5
  • LINC00254 2 170
  • Chromosome 16 Open Reading Frame 32 2
  • Non-Protein Coding RNA 254 2
  • NONHSAG018284 94
  • HSALNG0108947 169
  • NCRNA00254 3
  • C16orf32 3

External Ids for LINC00254 Gene

Additional External Ids for LINC00254 Gene

Previous HGNC Symbols for LINC00254 Gene

  • C16orf32
  • NCRNA00254

Previous GeneCards Identifiers for LINC00254 Gene

  • GC16M001931
  • GC16M001885
  • GC16M001888

Summaries for LINC00254 Gene

GeneCards Summary for LINC00254 Gene

LINC00254 (Long Intergenic Non-Protein Coding RNA 254) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00254 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00254 Gene

Genomics for LINC00254 Gene

GeneHancer (GH) Regulatory Elements for LINC00254 Gene

Promoters and enhancers for LINC00254 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J001882 Enhancer 0.6 Ensembl 750.6 -0.1 -83 0.4 MYC HLF MAX RAD21 CEBPG CREB1 PKNOX1 CEBPA RXRA ZBTB8A MEIOB LINC00254 FAHD1 LINC02124
GH16J001871 Promoter 1 Ensembl 0.4 +11.8 11833 0.8 ZBTB40 SMARCE1 L3MBTL2 ZNF148 GTF2F1 ZFX SMARCA4 GMEB1 IKZF1 DPF2 FAHD1 HAGH HS3ST6 RAB26 SNORD60 TRAF7 JPT2 HE856231 MEIOB LINC00254
GH16J001870 Enhancer 0.8 ENCODE 0.4 +13.5 13479 0.9 FOXA1 NR2F6 RAD21 MNT SP1 MAFK TFE3 CEBPG SP5 FOSL2 HE856231 FAHD1 HAGH HS3ST6 SNORD60 TRAF7 RAB26 JPT2 MEIOB LINC00254
GH16J001877 Enhancer 0.6 Ensembl 0.4 +6.4 6432 0.8 PRDM10 PATZ1 ZNF629 ZBTB17 ZFHX2 WT1 CEBPB KLF17 ATF2 PRDM6 HS3ST6 MAPK8IP3 MEIOB HAGH HE856231 LINC00254
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00254 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00254 Gene

Genomic Locations for LINC00254 Gene
chr16:1,878,285-1,884,233
(GRCh38/hg38)
Size:
5,949 bases
Orientation:
Minus strand
chr16:1,883,984-1,934,295
(GRCh37/hg19)
Size:
50,312 bases
Orientation:
Minus strand

Genomic View for LINC00254 Gene

Genes around LINC00254 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00254 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00254 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00254 Gene

Proteins for LINC00254 Gene

Post-translational modifications for LINC00254 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00254 Gene

Domains & Families for LINC00254 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00254 Gene

Function for LINC00254 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00254 Gene

Localization for LINC00254 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00254 Gene

Pathways & Interactions for LINC00254 Gene

PathCards logo

SuperPathways for LINC00254 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00254 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00254 Gene

Drugs & Compounds for LINC00254 Gene

No Compound Related Data Available

Transcripts for LINC00254 Gene

mRNA/cDNA for LINC00254 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LncBook transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00254 Gene

No ASD Table

Relevant External Links for LINC00254 Gene

GeneLoc Exon Structure for
LINC00254
ECgene alternative splicing isoforms for
LINC00254

Expression for LINC00254 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00254 Gene:

LINC00254

SOURCE GeneReport for Unigene cluster for LINC00254 Gene:

Hs.662737
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00254 Gene

Orthologs for LINC00254 Gene

Evolution for LINC00254 Gene

ENSEMBL:
Gene Tree for LINC00254 (if available)
TreeFam:
Gene Tree for LINC00254 (if available)

No data available for Orthologs for LINC00254 Gene

Paralogs for LINC00254 Gene

No data available for Paralogs for LINC00254 Gene

Variants for LINC00254 Gene

Sequence variations from dbSNP and Humsavar for LINC00254 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000202212 -- 1,884,780(-) T/C upstream_transcript_variant
rs1000282094 -- 1,879,440(-) T/ intron_variant
rs1000356593 -- 1,879,196(-) G/A intron_variant
rs1000573935 -- 1,885,033(-) T/G upstream_transcript_variant
rs1001918590 -- 1,882,865(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00254 Gene

Variant ID Type Subtype PubMed ID
dgv335n27 CNV gain 19166990
esv2422427 CNV duplication 17116639
nsv519366 CNV loss 19592680
nsv571177 CNV gain 21841781
nsv833119 CNV loss 17160897

Additional Variant Information for LINC00254 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00254

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00254 Gene

Disorders for LINC00254 Gene

Additional Disease Information for LINC00254

No disorders were found for LINC00254 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00254 Gene

Publications for LINC00254 Gene

No publications were found for LINC00254 Gene.

Products for LINC00254 Gene

Sources for LINC00254 Gene