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Aliases for LINC002481 Gene

Subcategory (RNA class) for LINC002481 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC002481 Gene

  • Long Intergenic Non-Protein Coding RNA 2481 2 3 5

External Ids for LINC002481 Gene

Summaries for LINC002481 Gene

GeneCards Summary for LINC002481 Gene

LINC002481 (Long Intergenic Non-Protein Coding RNA 2481) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC002481 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC002481 Gene

Genomics for LINC002481 Gene

GeneHancer (GH) Regulatory Elements for LINC002481 Gene

Promoters and enhancers for LINC002481 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J006687 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 650.7 -2.0 -1984 9.9 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B S100P LINC002481 ENSG00000279859 BLOC1S4 LOC93622 EVC2 LINC02482 GC04P006638 GC04P006634 GC04P006621
GH04J006664 Enhancer 0.6 Ensembl 11.6 +25.9 25885 0.3 CTCF ZNF687 ZNF384 RAD21 CTBP1 NFATC1 MYNN TARDBP ZNF444 RCOR1 LOC93622 MRFAP1 MRFAP1L1 BLOC1S4 LINC002481 S100P KIAA0232 LINC02482 GC04P006638 GC04P006634
GH04J006672 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +16.2 16220 3.1 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 LINC02482 BLOC1S4 LOC93622 MRFAP1L1 KIAA0232 S100P LINC002481 GC04P006638 GC04P006634 GC04P006621
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC002481 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC002481 Gene

Genomic Locations for LINC002481 Gene
chr4:6,687,448-6,690,729
(GRCh38/hg38)
Size:
3,282 bases
Orientation:
Minus strand
chr4:6,689,175-6,692,246
(GRCh37/hg19)
Size:
3,072 bases
Orientation:
Minus strand

Genomic View for LINC002481 Gene

Genes around LINC002481 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC002481 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC002481 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC002481 Gene

Proteins for LINC002481 Gene

Post-translational modifications for LINC002481 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC002481 Gene

Domains & Families for LINC002481 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC002481 Gene

Function for LINC002481 Gene

Phenotypes From GWAS Catalog for LINC002481 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC002481 Gene

Localization for LINC002481 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC002481 Gene

Pathways & Interactions for LINC002481 Gene

SuperPathways for LINC002481 Gene

No Data Available

Interacting Proteins for LINC002481 Gene

Gene Ontology (GO) - Biological Process for LINC002481 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC002481 Gene

Drugs & Compounds for LINC002481 Gene

No Compound Related Data Available

Transcripts for LINC002481 Gene

mRNA/cDNA for LINC002481 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC002481 Gene

No ASD Table

Relevant External Links for LINC002481 Gene

GeneLoc Exon Structure for
LINC002481
ECgene alternative splicing isoforms for
LINC002481

Expression for LINC002481 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC002481 Gene

Orthologs for LINC002481 Gene

Evolution for LINC002481 Gene

ENSEMBL:
Gene Tree for LINC002481 (if available)
TreeFam:
Gene Tree for LINC002481 (if available)

No data available for Orthologs for LINC002481 Gene

Paralogs for LINC002481 Gene

No data available for Paralogs for LINC002481 Gene

Variants for LINC002481 Gene

Sequence variations from dbSNP and Humsavar for LINC002481 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000807549 -- 6,687,403(-) T/G downstream_transcript_variant
rs1000882769 -- 6,687,635(-) G/C downstream_transcript_variant
rs10009150 -- 6,692,083(-) A/G upstream_transcript_variant
rs1000956968 -- 6,689,366(-) C/T non_coding_transcript_variant
rs1001844946 -- 6,690,303(-) C/G non_coding_transcript_variant

Additional Variant Information for LINC002481 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC002481

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC002481 Gene

Disorders for LINC002481 Gene

Additional Disease Information for LINC002481

No disorders were found for LINC002481 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC002481 Gene

Publications for LINC002481 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for LINC002481 Gene

Sources for LINC002481 Gene

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