Aliases for LINC00240 Gene

Subcategory (RNA class) for LINC00240 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00240 Gene

  • Long Intergenic Non-Protein Coding RNA 240 2 3 5
  • LINC00240 2 5 165
  • BA373D17.1 2 3
  • Chromosome 6 Open Reading Frame 41 2
  • Non-Protein Coding RNA 240 2
  • NONHSAG043262.2 91
  • HSALNG0048820 164
  • NCRNA00240 3
  • C6orf41 3

External Ids for LINC00240 Gene

Previous HGNC Symbols for LINC00240 Gene

  • C6orf41
  • NCRNA00240

Previous GeneCards Identifiers for LINC00240 Gene

  • GC06U902226
  • GC06P026998
  • GC06P026927

Summaries for LINC00240 Gene

GeneCards Summary for LINC00240 Gene

LINC00240 (Long Intergenic Non-Protein Coding RNA 240) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC00240 Gene

Additional gene information for LINC00240 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC00240 Gene

Genomics for LINC00240 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00240 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00240 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00240 Gene

Genomic Locations for LINC00240 Gene
chr6:26,956,932-27,059,749
(GRCh38/hg38)
Size:
102,818 bases
Orientation:
Plus strand
chr6:26,924,771-26,991,703
(GRCh37/hg19)
Size:
66,933 bases
Orientation:
Plus strand

Genomic View for LINC00240 Gene

Genes around LINC00240 on UCSC Golden Path with GeneCards custom track
LINC00240 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00240 Gene

Proteins for LINC00240 Gene

Post-translational modifications for LINC00240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00240 Gene

Domains & Families for LINC00240 Gene

Gene Families for LINC00240 Gene

genes like me logo Genes that share domains with LINC00240: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00240 Gene

Function for LINC00240 Gene

Phenotypes From GWAS Catalog for LINC00240 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00240 Gene

Localization for LINC00240 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00240 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00240 Gene

Pathways & Interactions for LINC00240 Gene

PathCards logo

SuperPathways for LINC00240 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00240 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00240 Gene

Drugs & Compounds for LINC00240 Gene

No Compound Related Data Available

Transcripts for LINC00240 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00240 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000962A1_9606 lncRNA 5607 3

Ensembl: ENST00000607607 (view in UCSC) ,

LncBook: HSALNT0103004,

LNCipedia: LINC00240:1,

URS000075C5E2_9606 lncRNA 977 2

HGNC: 18772,

RefSeq: NR_026775,

URS0000EEC9F3_9606 lncRNA 1418 1

Ensembl: ENST00000664092 (view in UCSC) ,

URS0000EECDFF_9606 lncRNA 1134 1

Ensembl: ENST00000659035 (view in UCSC) ,

URS0000EF312A_9606 lncRNA 1106 1

Ensembl: ENST00000654448 (view in UCSC) ,

LINC00240 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00240 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00240 Gene

No ASD Table

Relevant External Links for LINC00240 Gene

GeneLoc Exon Structure for
LINC00240

Expression for LINC00240 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00240 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00240

SOURCE GeneReport for Unigene cluster for LINC00240 Gene:

Hs.526951
genes like me logo Genes that share expression patterns with LINC00240: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00240 Gene

Orthologs for LINC00240 Gene

Evolution for LINC00240 Gene

ENSEMBL:
Gene Tree for LINC00240 (if available)
TreeFam:
Gene Tree for LINC00240 (if available)

No data available for Orthologs for LINC00240 Gene

Paralogs for LINC00240 Gene

No data available for Paralogs for LINC00240 Gene

Variants for LINC00240 Gene

Additional dbSNP identifiers (rs#s) for LINC00240 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00240 Gene

Variant ID Type Subtype PubMed ID
dgv10n29 CNV gain 16826518
esv2624135 CNV loss 19546169
esv2759410 CNV gain 17122850
esv2763937 CNV gain+loss 21179565
esv28434 CNV gain+loss 19812545
esv33111 CNV loss 17666407
esv3570819 CNV loss 25503493
nsv1029124 CNV loss 25217958
nsv10806 CNV gain+loss 18304495
nsv469625 CNV gain 16826518
nsv471636 CNV gain+loss 15918152
nsv830616 CNV gain 17160897
nsv969363 CNV duplication 23825009
nsv970206 CNV duplication 23825009
nsv981215 CNV duplication 23825009

Additional Variant Information for LINC00240 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00240

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00240 Gene

Disorders for LINC00240 Gene

No disorders were found for LINC00240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00240 Gene

Publications for LINC00240 Gene

  1. Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma. (PMID: 27966444) Yang S … Li Y (Oncotarget 2016) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00240 Gene

Sources for LINC00240 Gene