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Aliases for LINC00239 Gene

Subcategory (RNA class) for LINC00239 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00239 Gene

  • Long Intergenic Non-Protein Coding RNA 239 2 3 5
  • Chromosome 14 Open Reading Frame 72 2
  • Non-Protein Coding RNA 239 2
  • NCRNA00239 3
  • C14orf72 3

External Ids for LINC00239 Gene

Previous HGNC Symbols for LINC00239 Gene

  • C14orf72
  • NCRNA00239

Previous GeneCards Identifiers for LINC00239 Gene

  • GC14P102198
  • GC14P102256
  • GC14P101883
  • GC14P101906
  • GC14P102217
  • GC14P102384
  • GC14P102562
  • GC14P102734
  • GC14P102904
  • GC14P103080

Summaries for LINC00239 Gene

GeneCards Summary for LINC00239 Gene

LINC00239 (Long Intergenic Non-Protein Coding RNA 239) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00239 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00239 Gene

Genomics for LINC00239 Gene

GeneHancer (GH) Regulatory Elements for LINC00239 Gene

Promoters and enhancers for LINC00239 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J101730 Enhancer 1.4 Ensembl ENCODE dbSUPER 650.7 +1.6 1566 3.3 PKNOX1 MLX ARNT ARID4B YY1 CBX5 FOS DEK SP5 JUNB LINC00239 LINC02320 PPP2R5C ENSG00000258919
GH14J101760 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 5.2 +31.0 30983 2.8 HDGF CLOCK FOXA2 ARID4B SIN3A ZNF2 ZBTB7B YY1 POLR2B ZNF766 PPP2R5C ENSG00000258919 LINC00239 WDR20 HSP90AA1 GC14P103465
GH14J101719 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 6.4 -9.1 -9059 4.4 JUN ZNF384 THRB RARA ZNF335 GATA3 FOS ZNF362 ETV5 NR2F2 RCOR1 ENSG00000258919 PPP2R5C LINC00239 WDR20 LINC02320 RPL26P4
GH14J101705 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.9 -22.9 -22927 3.8 PKNOX1 ATF1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ETS1 POLR2B PPP2R5C MEG9 RPL26P4 ENSG00000258919 LINC00239 WDR20 LINC02320
GH14J101677 Promoter 1.1 Ensembl 5.5 -52.6 -52636 0.4 HDAC1 ATF1 ARNT NFRKB CHAMP1 TCF12 E2F8 EGR1 ATF7 ZBTB2 RPL26P4 LINC00239 GC14P103469 LINC02320
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00239 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00239 Gene

Genomic Locations for LINC00239 Gene
chr14:101,730,437-101,732,525
(GRCh38/hg38)
Size:
2,089 bases
Orientation:
Plus strand
chr14:102,196,774-102,198,862
(GRCh37/hg19)
Size:
2,089 bases
Orientation:
Plus strand

Genomic View for LINC00239 Gene

Genes around LINC00239 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00239 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00239 Gene

Proteins for LINC00239 Gene

Post-translational modifications for LINC00239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00239 Gene

Domains & Families for LINC00239 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00239 Gene

Function for LINC00239 Gene

Phenotypes From GWAS Catalog for LINC00239 Gene

genes like me logo Genes that share phenotypes with LINC00239: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00239 Gene

Localization for LINC00239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00239 Gene

Pathways & Interactions for LINC00239 Gene

SuperPathways for LINC00239 Gene

No Data Available

Interacting Proteins for LINC00239 Gene

Gene Ontology (GO) - Biological Process for LINC00239 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00239 Gene

Drugs & Compounds for LINC00239 Gene

No Compound Related Data Available

Transcripts for LINC00239 Gene

mRNA/cDNA for LINC00239 Gene

(1) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LINC00239 Gene

Long intergenic non-protein coding RNA 239:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00239 Gene

No ASD Table

Relevant External Links for LINC00239 Gene

GeneLoc Exon Structure for
LINC00239
ECgene alternative splicing isoforms for
LINC00239

Expression for LINC00239 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00239 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00239 Gene

This gene is overexpressed in Whole Blood (x7.0), Pituitary (x5.3), and Pancreas (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC00239 Gene:

LINC00239

SOURCE GeneReport for Unigene cluster for LINC00239 Gene:

Hs.150840
genes like me logo Genes that share expression patterns with LINC00239: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00239 Gene

Orthologs for LINC00239 Gene

Evolution for LINC00239 Gene

ENSEMBL:
Gene Tree for LINC00239 (if available)
TreeFam:
Gene Tree for LINC00239 (if available)

No data available for Orthologs for LINC00239 Gene

Paralogs for LINC00239 Gene

No data available for Paralogs for LINC00239 Gene

Variants for LINC00239 Gene

Sequence variations from dbSNP and Humsavar for LINC00239 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000095275 -- 101,730,059(+) T/C upstream_transcript_variant
rs1000358628 -- 101,732,653(+) T/C downstream_transcript_variant
rs1001153031 -- 101,731,231(+) A/G intron_variant
rs1002712536 -- 101,730,640(+) G/T intron_variant
rs1002764939 -- 101,730,385(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00239 Gene

Variant ID Type Subtype PubMed ID
dgv3924n54 CNV loss 21841781
esv3581407 CNV loss 25503493
nsv565885 CNV gain 21841781
nsv565889 CNV gain 21841781
nsv565911 CNV gain+loss 21841781
nsv565921 CNV loss 21841781

Additional Variant Information for LINC00239 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00239

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00239 Gene

Disorders for LINC00239 Gene

Additional Disease Information for LINC00239

No disorders were found for LINC00239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00239 Gene

Publications for LINC00239 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LINC00239 Gene

Sources for LINC00239 Gene

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