Aliases for LINC00208 Gene

RNA type for LINC00208 Gene

lncRNA

Aliases for LINC00208 Gene

External Ids for LINC00208 Gene

Previous HGNC Symbols for LINC00208 Gene

  • C8orf14
  • NCRNA00208

Previous GeneCards Identifiers for LINC00208 Gene

  • GC08U901571
  • GC08P011433

Summaries for LINC00208 Gene

GeneCards Summary for LINC00208 Gene

LINC00208 (Long Intergenic Non-Protein Coding RNA 208) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00208 include Keratolytic Winter Erythema.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00208 Gene

Genomics for LINC00208 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00208 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011571 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -3.8 -3820 2.9 ZNF10 NFIC ZIC2 YY1 CEBPB FEZF1 RXRA PRDM6 ZNF24 MAZ FAM90A2P FAM167A MTMR9 FAM66A DEFB134 ENSG00000255174 FAM66D LINC00208 ENSG00000269954 BLK
GH08J011566 Enhancer 0.9 ENCODE dbSUPER 0.4 -9.0 -9018 1 ZNF654 IKZF1 ZNF600 SSRP1 ZMYM3 CHD4 REST TRIM22 CTCF RAD21 FAM167A DEFB134 ENSG00000255174 ENSG00000269954 LINC00208 BLK GATA4
GH08J011578 Enhancer 0.3 Ensembl 0.7 +2.8 2843 1.4 KLF1 FAM167A-AS1 LINC00208 piR-39858-595 BLK GATA4
GH08J011568 Enhancer 0.3 Ensembl dbSUPER 0.4 -7.6 -7556 0.6 FAM167A DEFB134 ENSG00000255174 FAM66D ENSG00000269954 LINC00208 BLK GATA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00208 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00208 Gene

Latest Assembly
chr8:11,576,257-11,582,817
(GRCh38/hg38)
Size:
6,561 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,434,044-11,438,850
(GRCh37/hg19 by Entrez Gene)
Size:
4,807 bases
Orientation:
Plus strand

chr8:11,433,822-11,438,851
(GRCh37/hg19 by Ensembl)
Size:
5,030 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,766,767-1,771,584 (-)

Genomic View for LINC00208 Gene

Genes around LINC00208 on UCSC Golden Path with GeneCards custom track
LINC00208 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00208 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00208 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00208 Gene

Proteins for LINC00208 Gene

  • Protein details for LINC00208 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96KT6-CH014_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00208
    Protein Accession:
    Q96KT6

    Protein attributes for LINC00208 Gene

    Size:
    92 amino acids
    Molecular mass:
    9816 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00208 Gene

Post-translational modifications for LINC00208 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00208 Gene

Domains & Families for LINC00208 Gene

Gene Families for LINC00208 Gene

genes like me logo Genes that share domains with LINC00208: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00208 Gene

Function for LINC00208 Gene

Phenotypes From GWAS Catalog for LINC00208 Gene

genes like me logo Genes that share phenotypes with LINC00208: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00208 Gene

Localization for LINC00208 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00208 Gene

Pathways & Interactions for LINC00208 Gene

PathCards logo

SuperPathways for LINC00208 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00208 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00208 Gene

Drugs & Compounds for LINC00208 Gene

No Compound Related Data Available

Transcripts for LINC00208 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00208 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002FDE13_9606 lncRNA 2150 4

Ensembl: ENST00000304233 (view in UCSC) ,

LncBook: HSALNT0133096,

LNCipedia: LINC00208:1,

NONCODE: NONHSAT125068.2,

URS000075E981_9606 lncRNA 1927 2

RefSeq: NR_040035,

LNCipedia: LINC00208:3,

URS0000EF6DAC_9606 lncRNA 1492 1

Ensembl: ENST00000661938 (view in UCSC) ,

URS0000EF3F98_9606 lncRNA 1462 1

Ensembl: ENST00000653131 (view in UCSC) ,

URS0000EEB3C8_9606 lncRNA 1411 1

Ensembl: ENST00000655780 (view in UCSC) ,

LINC00208 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00208 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00208 Gene

No ASD Table

Relevant External Links for LINC00208 Gene

GeneLoc Exon Structure for
LINC00208

Expression for LINC00208 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00208 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00208 Gene

This gene is overexpressed in Testis (x53.0).

Protein differential expression in normal tissues from HIPED for LINC00208 Gene

This gene is overexpressed in Cerebrospinal fluid (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC00208 Gene



Protein tissue co-expression partners for LINC00208 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00208

SOURCE GeneReport for Unigene cluster for LINC00208 Gene:

Hs.742430
genes like me logo Genes that share expression patterns with LINC00208: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00208 Gene

Orthologs for LINC00208 Gene

Evolution for LINC00208 Gene

ENSEMBL:
Gene Tree for LINC00208 (if available)
TreeFam:
Gene Tree for LINC00208 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00208

No data available for Orthologs for LINC00208 Gene

Paralogs for LINC00208 Gene

No data available for Paralogs for LINC00208 Gene

Variants for LINC00208 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00208 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00208 Gene

Variant ID Type Subtype PubMed ID
dgv1374e214 CNV gain 21293372
dgv7014n100 CNV gain 25217958
esv34097 CNV loss 18971310
esv3616250 CNV gain 21293372
esv3616253 CNV loss 21293372
nsv1016749 CNV gain 25217958
nsv1017865 CNV gain 25217958
nsv523827 CNV gain 19592680

Additional Variant Information for LINC00208 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00208
Leiden Open Variation Database (LOVD)
LINC00208

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00208 Gene

Disorders for LINC00208 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00208 Gene - From: GCD

Disorder Aliases PubMed IDs
keratolytic winter erythema
  • kwe
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00208

genes like me logo Genes that share disorders with LINC00208: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00208 Gene

Publications for LINC00208 Gene

  1. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A … Kocher T (Journal of clinical periodontology 2013) 3
  2. Physical and transcriptional map of the critical region for keratolytic winter erythema (KWE) on chromosome 8p22-p23 between D8S550 and D8S1759. (PMID: 11896452) Appel S … Rosenthal A (European journal of human genetics : EJHG 2002) 3

Products for LINC00208 Gene

Sources for LINC00208 Gene