Aliases for LINC00207 Gene

Subcategory (RNA class) for LINC00207 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00207 Gene

  • Long Intergenic Non-Protein Coding RNA 207 2 3 5
  • LINC00207 2 168
  • Non-Protein Coding RNA 207 2
  • HSALNG0135870 167
  • NONHSAG034116 92
  • NCRNA00207 3

External Ids for LINC00207 Gene

Previous HGNC Symbols for LINC00207 Gene

  • NCRNA00207

Previous GeneCards Identifiers for LINC00207 Gene

  • GC22P044966

Summaries for LINC00207 Gene

GeneCards Summary for LINC00207 Gene

LINC00207 (Long Intergenic Non-Protein Coding RNA 207) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00207 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00207 Gene

Genomics for LINC00207 Gene

GeneHancer (GH) Regulatory Elements for LINC00207 Gene

Promoters and enhancers for LINC00207 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J044567 Enhancer 0.3 Ensembl 500.7 -1.8 -1794 0.6 CTCF ZSCAN29 LINC00207 KRT18P23 lnc-PRR5-5
GH22J044593 Enhancer 0.5 Ensembl CraniofacialAtlas dbSUPER 12.8 +23.4 23439 0.8 LINC00207 KRT18P23 LOC105373060
GH22J044543 Enhancer 0.4 Ensembl 12.9 -25.4 -25394 1 BATF ZNF768 JUNB ZFP36 KRT18P23 LINC00207 RTL6 ENSG00000220702 HSALNG0135865 LOC105373059 lnc-RTL6-6
GH22J044546 Enhancer 0.3 Ensembl 12.9 -22.4 -22394 0.2 ZFP3 KRT18P23 LINC00207 RTL6 ENSG00000220702 LOC105373059 HSALNG0135865 lnc-RTL6-6
GH22J044574 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +5.0 5005 1 JUND FOS ESRRA FOSL2 RCOR1 STAT3 KLF17 POLR3A GTF3C2 EGR2 SHISAL1 LINC00207 LOC105373060
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00207 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00207 Gene

Genomic Locations for LINC00207 Gene
chr22:44,569,295-44,572,453
(GRCh38/hg38)
Size:
3,159 bases
Orientation:
Plus strand
chr22:44,965,219-44,968,329
(GRCh37/hg19)
Size:
3,111 bases
Orientation:
Plus strand

Genomic View for LINC00207 Gene

Genes around LINC00207 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00207 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00207 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00207 Gene

Proteins for LINC00207 Gene

Post-translational modifications for LINC00207 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00207 Gene

Domains & Families for LINC00207 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00207 Gene

Function for LINC00207 Gene

Phenotypes From GWAS Catalog for LINC00207 Gene

genes like me logo Genes that share phenotypes with LINC00207: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00207

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00207 Gene

Localization for LINC00207 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00207 Gene

Pathways & Interactions for LINC00207 Gene

PathCards logo

SuperPathways for LINC00207 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00207 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00207 Gene

Drugs & Compounds for LINC00207 Gene

No Compound Related Data Available

Transcripts for LINC00207 Gene

mRNA/cDNA for LINC00207 Gene

9 RNACentral transcripts :
4 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00207

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00207 Gene

No ASD Table

Relevant External Links for LINC00207 Gene

GeneLoc Exon Structure for
LINC00207

Expression for LINC00207 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00207 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00207 Gene

This gene is overexpressed in Testis (x36.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00207

SOURCE GeneReport for Unigene cluster for LINC00207 Gene:

Hs.332685
genes like me logo Genes that share expression patterns with LINC00207: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00207 Gene

Orthologs for LINC00207 Gene

Evolution for LINC00207 Gene

ENSEMBL:
Gene Tree for LINC00207 (if available)
TreeFam:
Gene Tree for LINC00207 (if available)

No data available for Orthologs for LINC00207 Gene

Paralogs for LINC00207 Gene

No data available for Paralogs for LINC00207 Gene

Variants for LINC00207 Gene

Additional dbSNP identifiers (rs#s) for LINC00207 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00207 Gene

Variant ID Type Subtype PubMed ID
nsv979685 CNV duplication 23825009

Additional Variant Information for LINC00207 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00207

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00207 Gene

Disorders for LINC00207 Gene

Additional Disease Information for LINC00207

No disorders were found for LINC00207 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00207 Gene

Publications for LINC00207 Gene

  1. The genetic architecture of economic and political preferences. (PMID: 22566634) Benjamin DJ … Visscher PM (Proceedings of the National Academy of Sciences of the United States of America 2012) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00207 Gene

Sources for LINC00207 Gene