Aliases for LINC00205 Gene

Subcategory (RNA class) for LINC00205 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00205 Gene

  • Long Intergenic Non-Protein Coding RNA 205 2 3 5
  • Non-Protein Coding RNA 205 2
  • HSALNG0133618 169
  • NONHSAG033071 94
  • HSALNG0133620 169
  • NCRNA00205 3
  • LINC00205 170

External Ids for LINC00205 Gene

Previous HGNC Symbols for LINC00205 Gene

  • NCRNA00205

Previous GeneCards Identifiers for LINC00205 Gene

  • GC21U900438
  • GC21P046715
  • GC21P046717
  • GC21P046720
  • GC21P046726
  • GC21P046731
  • GC21M045290

Summaries for LINC00205 Gene

GeneCards Summary for LINC00205 Gene

LINC00205 (Long Intergenic Non-Protein Coding RNA 205) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00205 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00205 Gene

Genomics for LINC00205 Gene

GeneHancer (GH) Regulatory Elements for LINC00205 Gene

Promoters and enhancers for LINC00205 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00205 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00205 Gene

Genomic Locations for LINC00205 Gene
chr21:45,288,050-45,310,489
(GRCh38/hg38)
Size:
22,440 bases
Orientation:
Plus strand
chr21:46,713,200-46,717,269
(GRCh37/hg19)
Size:
4,070 bases
Orientation:
Plus strand

Genomic View for LINC00205 Gene

Genes around LINC00205 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00205 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00205 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00205 Gene

Proteins for LINC00205 Gene

Post-translational modifications for LINC00205 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00205 Gene

Domains & Families for LINC00205 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00205 Gene

Function for LINC00205 Gene

Phenotypes From GWAS Catalog for LINC00205 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00205 Gene

Localization for LINC00205 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00205 Gene

Pathways & Interactions for LINC00205 Gene

PathCards logo

SuperPathways for LINC00205 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00205 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00205 Gene

Drugs & Compounds for LINC00205 Gene

No Compound Related Data Available

Transcripts for LINC00205 Gene

mRNA/cDNA for LINC00205 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(33) RNACentral transcripts :
(12) LncBook transcripts :
(29) LNCipedia transcripts :
(17) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00205 Gene

No ASD Table

Relevant External Links for LINC00205 Gene

GeneLoc Exon Structure for
LINC00205
ECgene alternative splicing isoforms for
LINC00205

Expression for LINC00205 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00205 Gene

Protein differential expression in normal tissues from HIPED for LINC00205 Gene

This gene is overexpressed in Cervix (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LINC00205 Gene



Protein tissue co-expression partners for LINC00205 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of LINC00205 Gene:

LINC00205

SOURCE GeneReport for Unigene cluster for LINC00205 Gene:

Hs.11637
genes like me logo Genes that share expression patterns with LINC00205: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00205 Gene

Orthologs for LINC00205 Gene

Evolution for LINC00205 Gene

ENSEMBL:
Gene Tree for LINC00205 (if available)
TreeFam:
Gene Tree for LINC00205 (if available)

No data available for Orthologs for LINC00205 Gene

Paralogs for LINC00205 Gene

No data available for Paralogs for LINC00205 Gene

Variants for LINC00205 Gene

Sequence variations from dbSNP and Humsavar for LINC00205 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000444793 -- 45,295,299(+) C/T non_coding_transcript_variant
rs1000529822 -- 45,291,570(+) C/G non_coding_transcript_variant
rs1000776128 -- 45,286,236(+) C/T upstream_transcript_variant
rs1000918794 -- 45,295,168(+) G/A non_coding_transcript_variant
rs1001183707 -- 45,295,367(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00205 Gene

Variant ID Type Subtype PubMed ID
dgv7899n54 CNV gain 21841781
esv2762114 CNV gain 21179565
nsv953652 CNV deletion 24416366

Additional Variant Information for LINC00205 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00205

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00205 Gene

Disorders for LINC00205 Gene

Additional Disease Information for LINC00205

No disorders were found for LINC00205 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00205 Gene

Publications for LINC00205 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 56
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00205 Gene

Sources for LINC00205 Gene