Aliases for LINC00200 Gene

Subcategory (RNA class) for LINC00200 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00200 Gene

  • Long Intergenic Non-Protein Coding RNA 200 2 3 5
  • LINC00200 2 168
  • Chromosome 10 Open Reading Frame 139 2
  • Non-Protein Coding RNA 200 2
  • NONHSAG004982 92
  • HSALNG0075542 167
  • NCRNA00200 3
  • C10orf139 3

External Ids for LINC00200 Gene

Previous HGNC Symbols for LINC00200 Gene

  • C10orf139
  • NCRNA00200

Previous GeneCards Identifiers for LINC00200 Gene

  • GC10P001207

Summaries for LINC00200 Gene

GeneCards Summary for LINC00200 Gene

LINC00200 (Long Intergenic Non-Protein Coding RNA 200) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00200 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00200 Gene

Genomics for LINC00200 Gene

GeneHancer (GH) Regulatory Elements for LINC00200 Gene

Promoters and enhancers for LINC00200 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J001149 Enhancer 0.9 Ensembl ENCODE 10.4 -9.7 -9667 1 EP300 ZBTB11 TRIM28 CTBP1 MXI1 ZNF316 BMI1 GABPA MAX MAFK lnc-WDR37-4 LINC00200 piR-33156
GH10J001179 Enhancer 0.5 dbSUPER 8.4 +21.0 20979 3 MIER1 CTCF PTBP1 EZH2 EGR1 RAD21 PRDM4 BHLHE40 TARDBP lnc-ADARB2-6 LINC00200 lnc-IDI1-3 ADARB2
GH10J001199 Enhancer 0.5 Ensembl dbSUPER 7.9 +36.5 36533 0.2 EGR1 ZNF143 LINC00200 lnc-IDI1-3 lnc-ADARB2-6 ADARB2
GH10J001192 Enhancer 0.4 Ensembl dbSUPER 7.6 +34.0 34033 1.2 GATA3 LINC00200 lnc-IDI1-3 lnc-ADARB2-6 ADARB2
GH10J001195 Enhancer 0.4 FANTOM5 dbSUPER 5.5 +35.4 35449 0.4 LINC00200 lnc-IDI1-3 lnc-ADARB2-6 ADARB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00200 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00200 Gene

Genomic Locations for LINC00200 Gene
chr10:1,159,768-1,289,426
(GRCh38/hg38)
Size:
129,659 bases
Orientation:
Plus strand
chr10:1,205,708-1,210,612
(GRCh37/hg19)
Size:
4,905 bases
Orientation:
Plus strand

Genomic View for LINC00200 Gene

Genes around LINC00200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00200 Gene

Proteins for LINC00200 Gene

Post-translational modifications for LINC00200 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00200 Gene

Domains & Families for LINC00200 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00200 Gene

Function for LINC00200 Gene

Phenotypes From GWAS Catalog for LINC00200 Gene

Phenotypes for LINC00200 Gene

genes like me logo Genes that share phenotypes with LINC00200: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00200

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00200 Gene

Localization for LINC00200 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00200 Gene

Pathways & Interactions for LINC00200 Gene

PathCards logo

SuperPathways for LINC00200 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00200 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00200 Gene

Drugs & Compounds for LINC00200 Gene

No Compound Related Data Available

Transcripts for LINC00200 Gene

mRNA/cDNA for LINC00200 Gene

14 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
8 LncBook transcripts :
8 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00200

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00200 Gene

No ASD Table

Relevant External Links for LINC00200 Gene

GeneLoc Exon Structure for
LINC00200

Expression for LINC00200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00200 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00200 Gene

This gene is overexpressed in Testis (x18.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00200

SOURCE GeneReport for Unigene cluster for LINC00200 Gene:

Hs.721191
genes like me logo Genes that share expression patterns with LINC00200: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00200 Gene

Orthologs for LINC00200 Gene

Evolution for LINC00200 Gene

ENSEMBL:
Gene Tree for LINC00200 (if available)
TreeFam:
Gene Tree for LINC00200 (if available)

No data available for Orthologs for LINC00200 Gene

Paralogs for LINC00200 Gene

No data available for Paralogs for LINC00200 Gene

Variants for LINC00200 Gene

Additional dbSNP identifiers (rs#s) for LINC00200 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00200 Gene

Variant ID Type Subtype PubMed ID
dgv655n100 CNV gain 25217958
dgv656n100 CNV gain 25217958
esv1247301 CNV insertion 17803354
esv2660097 CNV deletion 23128226
esv3891737 CNV gain 25118596
nsv1041498 CNV gain 25217958
nsv1046041 CNV gain 25217958
nsv1054432 CNV gain 25217958
nsv1140114 CNV insertion 24896259
nsv1161922 CNV duplication 26073780
nsv517780 CNV loss 19592680
nsv549768 CNV gain 21841781

Additional Variant Information for LINC00200 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00200

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00200 Gene

Disorders for LINC00200 Gene

Additional Disease Information for LINC00200

No disorders were found for LINC00200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00200 Gene

Publications for LINC00200 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00200 Gene

Sources for LINC00200 Gene