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Aliases for LINC00174 Gene

Subcategory (RNA class) for LINC00174 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00174 Gene

  • Long Intergenic Non-Protein Coding RNA 174 2 3 5
  • Non-Protein Coding RNA 174 2
  • NCRNA00174 3

External Ids for LINC00174 Gene

Previous HGNC Symbols for LINC00174 Gene

  • NCRNA00174

Previous GeneCards Identifiers for LINC00174 Gene

  • GC07M065842

Summaries for LINC00174 Gene

GeneCards Summary for LINC00174 Gene

LINC00174 (Long Intergenic Non-Protein Coding RNA 174) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00174 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00174 Gene

Genomics for LINC00174 Gene

GeneHancer (GH) Regulatory Elements for LINC00174 Gene

Promoters and enhancers for LINC00174 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I066492 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 +0.1 101 2.3 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B GS1-124K5.4 GC07M066492 LINC00174 LOC100996437 RABGEF1 VKORC1L1 ENSG00000244510
GH07I066494 Enhancer 0.6 ENCODE 550.8 -1.2 -1172 0.1 SMARCA5 ZNF639 ZNF282 L3MBTL2 NRF1 ATF4 EGR1 PRDM10 MGA GC07M066492 GS1-124K5.4 LINC00174 GC07P066497
GH07I065749 Promoter/Enhancer 1.5 Ensembl ENCODE 22.6 +742.5 742457 2.8 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 YY1 CCT6P1 VKORC1L1 ENSG00000244657 LOC100996437 ENSG00000230189 LINC00174 ENSG00000229180 LOC84214 LOC100420547 GTF2IP9
GH07I065872 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.2 +620.1 620095 1.9 ARNT SIN3A DMAP1 GTF3C2 ZNF213 SP3 SP5 MXD4 GMEB1 ZNF184 VKORC1L1 LOC100996437 RABGEF1 LINC00174 ZNF117 LOC84214 LOC105375335 GC07P065961 PIR33872 GC07M065776
GH07I066993 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 4.3 -502.2 -502212 4.4 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 TYW1 SBDS ENSG00000229180 LOC100420547 ENSG00000244657 SPDYE21P TMEM248 RABGEF1 ENSG00000230189 STAG3L4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00174 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00174 Gene

Genomic Locations for LINC00174 Gene
chr7:66,376,044-66,493,566
(GRCh38/hg38)
Size:
117,523 bases
Orientation:
Minus strand
chr7:65,841,031-65,866,325
(GRCh37/hg19)

Genomic View for LINC00174 Gene

Genes around LINC00174 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00174 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00174 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00174 Gene

Proteins for LINC00174 Gene

Post-translational modifications for LINC00174 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00174 Gene

Domains & Families for LINC00174 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00174 Gene

Function for LINC00174 Gene

Phenotypes for LINC00174 Gene

GenomeRNAi human phenotypes for LINC00174:
genes like me logo Genes that share phenotypes with LINC00174: view

miRNA for LINC00174 Gene

miRTarBase miRNAs that target LINC00174

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00174 Gene

Localization for LINC00174 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00174 Gene

Pathways & Interactions for LINC00174 Gene

SuperPathways for LINC00174 Gene

No Data Available

Interacting Proteins for LINC00174 Gene

Gene Ontology (GO) - Biological Process for LINC00174 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00174 Gene

Drugs & Compounds for LINC00174 Gene

No Compound Related Data Available

Transcripts for LINC00174 Gene

Unigene Clusters for LINC00174 Gene

Long intergenic non-protein coding RNA 174:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00174 Gene

No ASD Table

Relevant External Links for LINC00174 Gene

GeneLoc Exon Structure for
LINC00174
ECgene alternative splicing isoforms for
LINC00174

Expression for LINC00174 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00174 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00174 Gene

This gene is overexpressed in Testis (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00174 Gene:

LINC00174

SOURCE GeneReport for Unigene cluster for LINC00174 Gene:

Hs.50755
genes like me logo Genes that share expression patterns with LINC00174: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00174 Gene

Orthologs for LINC00174 Gene

Evolution for LINC00174 Gene

ENSEMBL:
Gene Tree for LINC00174 (if available)
TreeFam:
Gene Tree for LINC00174 (if available)

No data available for Orthologs for LINC00174 Gene

Paralogs for LINC00174 Gene

No data available for Paralogs for LINC00174 Gene

Variants for LINC00174 Gene

Sequence variations from dbSNP and Humsavar for LINC00174 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000053652 -- 66,378,621(-) A/G non_coding_transcript_variant
rs1000106384 -- 66,381,801(-) G/A intron_variant
rs1000139807 -- 66,398,650(-) T/C intron_variant
rs1000197435 -- 66,398,947(-) G/C intron_variant
rs1000361622 -- 66,385,511(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00174 Gene

Variant ID Type Subtype PubMed ID
esv1272173 CNV deletion 17803354
esv2664145 CNV deletion 23128226
esv2671443 CNV deletion 23128226
esv32937 CNV gain 17666407
esv3541802 CNV deletion 23714750
esv3891135 CNV gain 25118596
esv999969 CNV deletion 20482838
nsv435858 CNV deletion 17901297
nsv508458 CNV deletion 20534489
nsv511970 CNV loss 21212237
nsv950539 CNV deletion 24416366
nsv956968 CNV deletion 24416366
nsv981506 CNV duplication 23825009

Additional Variant Information for LINC00174 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00174

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00174 Gene

Disorders for LINC00174 Gene

Additional Disease Information for LINC00174

No disorders were found for LINC00174 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00174 Gene

Publications for LINC00174 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00174 Gene

Sources for LINC00174 Gene

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