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Aliases for LINC00173 Gene

Subcategory (RNA class) for LINC00173 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00173 Gene

  • Long Intergenic Non-Protein Coding RNA 173 2 3 5
  • NCRNA00173 3 4
  • Putative Uncharacterized Protein Encoded By LINC00173 4
  • Non-Protein Coding RNA 173 2

External Ids for LINC00173 Gene

Previous HGNC Symbols for LINC00173 Gene

  • NCRNA00173

Previous GeneCards Identifiers for LINC00173 Gene

  • GC12P116973

Summaries for LINC00173 Gene

GeneCards Summary for LINC00173 Gene

LINC00173 (Long Intergenic Non-Protein Coding RNA 173) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00173 include Astrocytoma and Glioblastoma.

Additional gene information for LINC00173 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00173 Gene

Genomics for LINC00173 Gene

GeneHancer (GH) Regulatory Elements for LINC00173 Gene

Promoters and enhancers for LINC00173 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J116532 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 616.2 +0.6 625 2.8 SP1 ZNF148 MLLT1 ZNF121 ZNF384 ZBTB7A SP7 KLF14 MZF1 EGR1 LINC00173 GC12P116544
GH12J116531 Enhancer 0.3 dbSUPER 600.7 -1.6 -1641 0.7 ZNF189 LINC00173 MED13L GC12P116525
GH12J116547 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 15.1 +14.8 14802 1.7 CREM IKZF1 PKNOX1 POLR2A ZNF316 EP300 CBFB MGA EED CTBP1 MAP1LC3B2 LINC00173 ENSG00000275898
GH12J116536 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 15 +5.3 5289 4.3 NKRF MAFK JUND RELA CREM ZBED1 IKZF1 ZNF600 IKZF2 REST MAP1LC3B2 MED13L LINC00173 GC12P116544
GH12J116556 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 8.8 +25.9 25925 5 ZFX SP1 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 GTF2F1 BACH1 MAFK FBXW8 LINC00173 MAP1LC3B2 ENSG00000275898
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00173 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00173 Gene

Genomic Locations for LINC00173 Gene
chr12:116,533,422-116,536,518
(GRCh38/hg38)
Size:
3,097 bases
Orientation:
Plus strand
chr12:116,971,227-116,974,323
(GRCh37/hg19)
Size:
3,097 bases
Orientation:
Plus strand

Genomic View for LINC00173 Gene

Genes around LINC00173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00173 Gene

Proteins for LINC00173 Gene

  • Protein details for LINC00173 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZV60-YL023_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00173
    Protein Accession:
    Q6ZV60

    Protein attributes for LINC00173 Gene

    Size:
    143 amino acids
    Molecular mass:
    16386 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00173 Gene

Post-translational modifications for LINC00173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00173 Gene

Domains & Families for LINC00173 Gene

Gene Families for LINC00173 Gene

Protein Domains for LINC00173 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00173: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00173 Gene

Function for LINC00173 Gene

Phenotypes From GWAS Catalog for LINC00173 Gene

genes like me logo Genes that share phenotypes with LINC00173: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00173 Gene

Localization for LINC00173 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00173 Gene

Pathways & Interactions for LINC00173 Gene

PathCards logo

SuperPathways for LINC00173 Gene

No Data Available

Interacting Proteins for LINC00173 Gene

Gene Ontology (GO) - Biological Process for LINC00173 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00173 Gene

Drugs & Compounds for LINC00173 Gene

No Compound Related Data Available

Transcripts for LINC00173 Gene

mRNA/cDNA for LINC00173 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Unigene Clusters for LINC00173 Gene

Long intergenic non-protein coding RNA 173:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00173 Gene

No ASD Table

Relevant External Links for LINC00173 Gene

GeneLoc Exon Structure for
LINC00173
ECgene alternative splicing isoforms for
LINC00173

Expression for LINC00173 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00173 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00173 Gene

This gene is overexpressed in Whole Blood (x6.1) and Brain - Cerebellum (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00173 Gene:

LINC00173

SOURCE GeneReport for Unigene cluster for LINC00173 Gene:

Hs.441601
genes like me logo Genes that share expression patterns with LINC00173: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00173 Gene

Orthologs for LINC00173 Gene

Evolution for LINC00173 Gene

ENSEMBL:
Gene Tree for LINC00173 (if available)
TreeFam:
Gene Tree for LINC00173 (if available)

No data available for Orthologs for LINC00173 Gene

Paralogs for LINC00173 Gene

No data available for Paralogs for LINC00173 Gene

Variants for LINC00173 Gene

Sequence variations from dbSNP and Humsavar for LINC00173 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000212082 -- 116,534,429(+) C/G intron_variant, non_coding_transcript_variant
rs1000331228 -- 116,531,770(+) T/C upstream_transcript_variant
rs1000547090 -- 116,532,962(+) C/T upstream_transcript_variant
rs1000712730 -- 116,534,089(+) C/G intron_variant, non_coding_transcript_variant
rs1000716452 -- 116,532,724(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00173 Gene

Variant ID Type Subtype PubMed ID
esv3630848 CNV gain 21293372
nsv1071057 CNV deletion 25765185

Additional Variant Information for LINC00173 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00173

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00173 Gene

Disorders for LINC00173 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC00173 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
glioblastoma
  • glioblastoma multiforme
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00173

genes like me logo Genes that share disorders with LINC00173: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00173 Gene

Publications for LINC00173 Gene

  1. Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection. (PMID: 28803142) Postler TS … Ghosh S (Virology 2017) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Dependence of Human Colorectal Cells Lacking the FBW7 Tumor Suppressor on the Spindle Assembly Checkpoint. (PMID: 26354767) Bailey ML … Hieter P (Genetics 2015) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00173 Gene

Sources for LINC00173 Gene

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