Aliases for LINC00173 Gene

Subcategory (RNA class) for LINC00173 Gene


Quality Score for this RNA gene is


Aliases for LINC00173 Gene

  • Long Intergenic Non-Protein Coding RNA 173 2 3 5
  • NCRNA00173 3 4
  • Putative Uncharacterized Protein Encoded By LINC00173 4
  • Non-Protein Coding RNA 173 2
  • Lnc-MAP1LC3B2-28 170
  • NONHSAG012421 94
  • HSALNG0094329 169
  • HSALNG0094327 169
  • NONHSAG012423 94
  • NONHSAG012424 94
  • HSALNG0094332 169
  • LINC00173 2

External Ids for LINC00173 Gene

Previous HGNC Symbols for LINC00173 Gene

  • NCRNA00173

Previous GeneCards Identifiers for LINC00173 Gene

  • GC12P116973

Summaries for LINC00173 Gene

GeneCards Summary for LINC00173 Gene

LINC00173 (Long Intergenic Non-Protein Coding RNA 173) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00173 include Glioblastoma and Hepatocellular Carcinoma.

Additional gene information for LINC00173 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00173 Gene

Genomics for LINC00173 Gene

GeneHancer (GH) Regulatory Elements for LINC00173 Gene

Promoters and enhancers for LINC00173 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J116532 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 766.2 +0.6 609 2.9 ZNF362 ZNF121 SP1 ZNF148 ZNF384 POLR2A MLLT1 SP7 EGR1 KLF14 LINC00173 lnc-C12orf49-9
GH12J116531 Enhancer 0.2 dbSUPER 750.6 -1.6 -1641 0.7 LINC00173 MED13L HSALNG0094326
GH12J116536 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.9 +5.3 5278 4.6 ZNF362 JUND ETV6 RELA HLF NKRF MAFK CREM ZBED1 IKZF1 lnc-C12orf49-11 MAP1LC3B2 MED13L LINC00173 HQ292169
GH12J116551 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 15.6 +19.1 19078 3.4 SMARCE1 ZKSCAN8 ZNF148 MLLT1 BACH1 SMARCA4 MCM2 TRIM24 GMEB1 DPF2 FBXW8 MAP1LC3B2 MED13L LINC00173 lnc-MAP1LC3B2-28 piR-47675-028 lnc-C12orf49-10
GH12J116547 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 15 +14.8 14802 1.7 SMARCE1 MYC L3MBTL2 MAX CREM POLR2A IKZF1 PKNOX1 ZNF316 CBFB MAP1LC3B2 lnc-MAP1LC3B2-28 LINC00173 piR-47675-028 lnc-C12orf49-10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00173 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00173 Gene

Genomic Locations for LINC00173 Gene
17,319 bases
Plus strand
3,097 bases
Plus strand

Genomic View for LINC00173 Gene

Genes around LINC00173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00173 Gene

Proteins for LINC00173 Gene

  • Protein details for LINC00173 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC00173
    Protein Accession:

    Protein attributes for LINC00173 Gene

    143 amino acids
    Molecular mass:
    16386 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00173 Gene

Post-translational modifications for LINC00173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00173 Gene

Domains & Families for LINC00173 Gene

Gene Families for LINC00173 Gene

Protein Domains for LINC00173 Gene

genes like me logo Genes that share domains with LINC00173: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00173 Gene

Function for LINC00173 Gene

Phenotypes From GWAS Catalog for LINC00173 Gene

genes like me logo Genes that share phenotypes with LINC00173: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00173 Gene

Localization for LINC00173 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00173 Gene

Pathways & Interactions for LINC00173 Gene

PathCards logo

SuperPathways for LINC00173 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00173 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00173 Gene

Drugs & Compounds for LINC00173 Gene

No Compound Related Data Available

Transcripts for LINC00173 Gene

mRNA/cDNA for LINC00173 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(19) RNACentral transcripts :
(11) LncBook transcripts :
(17) LNCipedia transcripts :
(9) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00173 Gene

No ASD Table

Relevant External Links for LINC00173 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00173 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00173 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00173 Gene

This gene is overexpressed in Whole Blood (x6.1) and Brain - Cerebellum (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of LINC00173 Gene:


SOURCE GeneReport for Unigene cluster for LINC00173 Gene:

genes like me logo Genes that share expression patterns with LINC00173: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00173 Gene

Orthologs for LINC00173 Gene

Evolution for LINC00173 Gene

Gene Tree for LINC00173 (if available)
Gene Tree for LINC00173 (if available)

No data available for Orthologs for LINC00173 Gene

Paralogs for LINC00173 Gene

No data available for Paralogs for LINC00173 Gene

Variants for LINC00173 Gene

Sequence variations from dbSNP and Humsavar for LINC00173 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000212082 -- 116,534,429(+) C/G intron_variant, non_coding_transcript_variant
rs1000331228 -- 116,531,770(+) T/C upstream_transcript_variant
rs1000547090 -- 116,532,962(+) C/T upstream_transcript_variant
rs1000712730 -- 116,534,089(+) C/G intron_variant, non_coding_transcript_variant
rs1000716452 -- 116,532,724(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00173 Gene

Variant ID Type Subtype PubMed ID
esv3630848 CNV gain 21293372
nsv1071057 CNV deletion 25765185

Additional Variant Information for LINC00173 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00173 Gene

Disorders for LINC00173 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00173 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
  • glioblastoma multiforme
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00173

genes like me logo Genes that share disorders with LINC00173: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00173 Gene

Publications for LINC00173 Gene

  1. Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection. (PMID: 28803142) Postler TS … Ghosh S (Virology 2017) 2 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  4. Dependence of Human Colorectal Cells Lacking the FBW7 Tumor Suppressor on the Spindle Assembly Checkpoint. (PMID: 26354767) Bailey ML … Hieter P (Genetics 2015) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00173 Gene

Sources for LINC00173 Gene