LINC00167 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 167

GC11P130002
GIFtS:
17
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Aliases for LINC00167 Gene

Data sources for LINC00167 Gene:

Subcategory (RNA class) for LINC00167 Gene

lncRNA

Aliases for LINC00167 Gene

External Ids for LINC00167 Gene

Previous HGNC Symbols for LINC00167 Gene

  • C11orf37
  • NCRNA00167

Previous GeneCards Identifiers for LINC00167 Gene

  • GC11P129873

Summaries for LINC00167 Gene

GeneCards Summary for LINC00167 Gene

LINC00167 (Long Intergenic Non-Protein Coding RNA 167) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00167 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00167 Gene

Genomics for LINC00167 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00167 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00167 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00167 Gene

Latest Assembly
chr11:130,002,623-130,005,486
(GRCh38/hg38)
Size:
2,864 bases
Orientation:
Plus strand

Previous Assembly
chr11:129,872,519-129,875,381
(GRCh37/hg19 by Entrez Gene)
Size:
2,863 bases
Orientation:
Plus strand

chr11:129,872,833-129,874,251
(GRCh37/hg19 by Ensembl)
Size:
1,419 bases
Orientation:
Plus strand

Genomic View for LINC00167 Gene

Genes around LINC00167 on UCSC Golden Path with GeneCards custom track
LINC00167 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00167 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00167 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00167 Gene

Proteins for LINC00167 Gene

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  • Protein details for LINC00167 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96N53-CK037_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00167
    Protein Accession:
    Q96N53
    Secondary Accessions:
    • B2RP80

    Protein attributes for LINC00167 Gene

    Size:
    147 amino acids
    Molecular mass:
    15424 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00167 Gene

Post-translational modifications for LINC00167 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00167 Gene

Domains & Families for LINC00167 Gene

Gene Families for LINC00167 Gene

HGNC:

Protein Domains for LINC00167 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00167: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00167 Gene

Function for LINC00167 Gene

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  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LINC00167 Gene

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00167

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00167 Gene

Localization for LINC00167 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00167 Gene

Pathways & Interactions for LINC00167 Gene

PathCards logo

SuperPathways for LINC00167 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00167 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00167 Gene

Drugs & Compounds for LINC00167 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC00167 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00167 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AE8C_9606 lncRNA 2863 3

RefSeq: NR_024233,

LNCipedia: LINC00167:1,

NONCODE: NONHSAT025106.2,

URS00001F9499_9606 lncRNA 1420 2

Ensembl: ENST00000530583 (view in UCSC) ,

LNCipedia: LINC00167:2,

URS0000D59DAA_9606 lncRNA 1152 1

LNCipedia: LINC00167:3,

LINC00167 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00167 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00167

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00167 Gene

No ASD Table

Relevant External Links for LINC00167 Gene

GeneLoc Exon Structure for
LINC00167

Expression for LINC00167 Gene

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  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00167 Gene

mRNA expression in normal human tissues for LINC00167 Gene
mRNA expression by GTEx for LINC00167 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00167 Gene

This gene is overexpressed in Testis (x26.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00167

SOURCE GeneReport for Unigene cluster for LINC00167 Gene:

Hs.630600
genes like me logo Genes that share expression patterns with LINC00167: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00167 Gene

Orthologs for LINC00167 Gene

Evolution for LINC00167 Gene

ENSEMBL:
Gene Tree for LINC00167 (if available)
TreeFam:
Gene Tree for LINC00167 (if available)

No data available for Orthologs for LINC00167 Gene

Paralogs for LINC00167 Gene

No data available for Paralogs for LINC00167 Gene

Variants for LINC00167 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00167 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00167 Gene

Variant ID Type Subtype PubMed ID
dgv251n67 CNV gain 20364138
nsv556565 CNV loss 21841781

Additional Variant Information for LINC00167 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00167

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00167 Gene

Disorders for LINC00167 Gene

Additional Disease Information for LINC00167

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for LINC00167 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00167 Gene

Publications for LINC00167 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC00167 gene in Mastermind

Products for LINC00167 Gene

Sources for LINC00167 Gene