Aliases for LINC00160 Gene

Subcategory (RNA class) for LINC00160 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00160 Gene

  • Long Intergenic Non-Protein Coding RNA 160 2 3 5
  • LINC00160 2 5 165
  • Chromosome 21 Open Reading Frame 52 2
  • Non-Protein Coding RNA 160 2
  • NONHSAG032743.2 91
  • HSALNG0132865 164
  • NCRNA00160 3
  • C21orf52 3

External Ids for LINC00160 Gene

Previous HGNC Symbols for LINC00160 Gene

  • C21orf52
  • NCRNA00160

Previous GeneCards Identifiers for LINC00160 Gene

  • GC21P036097

Summaries for LINC00160 Gene

GeneCards Summary for LINC00160 Gene

LINC00160 (Long Intergenic Non-Protein Coding RNA 160) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00160 include Breast Cancer.

Additional gene information for LINC00160 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00160 Gene

Genomics for LINC00160 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00160 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034737 Enhancer 0.8 Ensembl ENCODE 600.7 -0.3 -296 0.6 ZIC2 MAFK PKNOX1 ESR1 GATA3 ELF1 JUND FOXA1 ZBTB40 MEIS2 LINC00160 HSALNG0132867 CLIC6 LINC01426 LOC107985515
GH21J034736 Enhancer 0.5 Ensembl 600.7 +0.7 703 1 FOXA1 CEBPB CEBPG ELF1 JUND TCF7L2 ZNF350 ZBTB40 NR3C1 LINC00160 HSALNG0132867 LOC107985515 lnc-CLIC6-1 CLIC6
GH21J034733 Enhancer 0.9 Ensembl ENCODE 0.7 +2.7 2658 1.8 CREB1 ZHX2 FOXA1 ATF7 ZKSCAN1 CTBP1 ESRRA ZNF592 PKNOX1 ZNF217 CLIC6 LINC00160 LOC107985515 lnc-CLIC6-1
GH21J034723 Enhancer 0.8 Ensembl ENCODE 0.4 +13.6 13554 1.7 CTCF RFX1 SCRT2 CTBP1 GATAD2A ZFHX2 RAD21 ZNF687 ZBTB7B ZEB2 lnc-CLIC6-1 CLIC6 lnc-RUNX1-4 LINC00160
GH21J034729 Enhancer 0.7 Ensembl ENCODE 0.4 +5.7 5717 3.4 PKNOX1 GABPA FOSL1 ESR1 GATA3 JUND ETV1 ATF1 MEIS2 ELF1 LOC107985515 LINC00160 lnc-CLIC6-1 CLIC6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00160 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00160 Gene

Genomic Locations for LINC00160 Gene
chr21:34,723,806-34,737,204
(GRCh38/hg38)
Size:
13,399 bases
Orientation:
Minus strand
chr21:36,096,105-36,109,479
(GRCh37/hg19)
Size:
13,375 bases
Orientation:
Plus strand

Genomic View for LINC00160 Gene

Genes around LINC00160 on UCSC Golden Path with GeneCards custom track
LINC00160 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00160 Gene

Proteins for LINC00160 Gene

Post-translational modifications for LINC00160 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00160 Gene

Domains & Families for LINC00160 Gene

Gene Families for LINC00160 Gene

genes like me logo Genes that share domains with LINC00160: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00160 Gene

Function for LINC00160 Gene

Phenotypes From GWAS Catalog for LINC00160 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00160 Gene

Localization for LINC00160 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00160 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00160 Gene

Pathways & Interactions for LINC00160 Gene

PathCards logo

SuperPathways for LINC00160 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00160 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00160 Gene

Drugs & Compounds for LINC00160 Gene

No Compound Related Data Available

Transcripts for LINC00160 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00160 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C4D7_9606 lncRNA 694 4

HGNC: 1294,

RefSeq: NR_024351,

LNCipedia: LINC00160:1,

NONCODE: NONHSAT081887.2,

URS000001828A_9606 lncRNA 693 2

Ensembl: ENST00000430635 (view in UCSC) ,

LNCipedia: LINC00160:2,

URS0000E88A91_9606 lncRNA 979 1

Ensembl: ENST00000651753 (view in UCSC) ,

URS00009B4D10_9606 lncRNA 675 2

LncBook: HSALNT0273121,

NONCODE: NONHSAT191425.1,

URS0000EA9DDA_9606 lncRNA 700 1

LncBook: HSALNT0289022,

LINC00160 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00160 Gene

3 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00160 Gene

No ASD Table

Relevant External Links for LINC00160 Gene

GeneLoc Exon Structure for
LINC00160

Expression for LINC00160 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00160 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00160 Gene

This gene is overexpressed in Minor Salivary Gland (x21.3), Vagina (x8.5), Muscle - Skeletal (x6.9), and Cervix - Ectocervix (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00160

SOURCE GeneReport for Unigene cluster for LINC00160 Gene:

Hs.436868
genes like me logo Genes that share expression patterns with LINC00160: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00160 Gene

Orthologs for LINC00160 Gene

Evolution for LINC00160 Gene

ENSEMBL:
Gene Tree for LINC00160 (if available)
TreeFam:
Gene Tree for LINC00160 (if available)

No data available for Orthologs for LINC00160 Gene

Paralogs for LINC00160 Gene

No data available for Paralogs for LINC00160 Gene

Variants for LINC00160 Gene

Additional dbSNP identifiers (rs#s) for LINC00160 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00160 Gene

Variant ID Type Subtype PubMed ID
esv3646927 CNV loss 21293372
nsv1055971 CNV gain 25217958
nsv474366 CNV novel sequence insertion 20440878

Additional Variant Information for LINC00160 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00160 Gene

Disorders for LINC00160 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00160 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast lobular carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00160: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00160 Gene

Publications for LINC00160 Gene

  1. Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer. (PMID: 26426411) Jonsson P … Williams C (Molecular endocrinology (Baltimore, Md.) 2015) 2 3
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3

Products for LINC00160 Gene

Sources for LINC00160 Gene