Aliases for LINC00160 Gene

Data sources for LINC00160 Gene:

RNA type for LINC00160 Gene

lncRNA

Aliases for LINC00160 Gene

External Ids for LINC00160 Gene

Previous HGNC Symbols for LINC00160 Gene

  • C21orf52
  • NCRNA00160

Previous GeneCards Identifiers for LINC00160 Gene

  • GC21P036097

Summaries for LINC00160 Gene

GeneCards Summary for LINC00160 Gene

LINC00160 (Long Intergenic Non-Protein Coding RNA 160) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00160 include Breast Cancer.

Additional gene information for LINC00160 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00160 Gene

Genomics for LINC00160 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00160 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J034737 Enhancer 0.6 ENCODE 250.7 +0.0 13 0.2 JUND ELF1 MAFK TCF7L2 ZBTB40 PKNOX1 FOXA1 NCOA3 MEIS2 ZNF350 LINC00160 HSALNG0132867 HSALNG0132865 LOC107985515 CLIC6
GH21J034736 Enhancer 0.5 Ensembl 250.7 +0.4 401 0.2 JUND ELF1 TCF7L2 FOXA1 ZNF350 CEBPB CEBPG LINC00160 HSALNG0132867 HSALNG0132865 LOC107985515 lnc-CLIC6-1 CLIC6
GH21J034738 Enhancer 0.5 Ensembl 250.7 -0.2 -198 0.2 MAFK TCF7L2 PKNOX1 NCOA3 MEIS2 EP300 LINC00160 HSALNG0132867 CLIC6 HSALNG0132865 LOC107985515
GH21J034733 Enhancer 0.7 ENCODE 0.7 +2.8 2756 1.8 JUND ZNF217 MBD2 ELF1 CTBP1 CUX1 SMARCE1 PKNOX1 FOXA1 DPF2 CLIC6 LINC00160 LOC107985515 HSALNG0132865 lnc-CLIC6-1
GH21J034727 Enhancer 0.6 ENCODE 0.4 +8.8 8787 1.6 ELF1 RXRA HNF4A FOXA1 NFIB NCOA3 SP1 ZNF687 EP300 SCRT2 LOC107985515 LINC01426 CLIC6 lnc-CLIC6-1 LINC00160 HSALNG0132865
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00160 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00160 Gene

Latest Assembly
chr21:34,723,723-34,737,302
(GRCh38/hg38)
Size:
13,580 bases
Orientation:
Minus strand

Previous Assembly
chr21:36,096,105-36,109,479
(GRCh37/hg19 by Entrez Gene)
Size:
13,375 bases
Orientation:
Minus strand

chr21:36,096,105-36,109,478
(GRCh37/hg19 by Ensembl)
Size:
13,374 bases
Orientation:
Minus strand

Genomic View for LINC00160 Gene

Genes around LINC00160 on UCSC Golden Path with GeneCards custom track
LINC00160 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00160 Gene

Proteins for LINC00160 Gene

Post-translational modifications for LINC00160 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00160 Gene

Domains & Families for LINC00160 Gene

Gene Families for LINC00160 Gene

genes like me logo Genes that share domains with LINC00160: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00160 Gene

Function for LINC00160 Gene

Phenotypes From GWAS Catalog for LINC00160 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00160 Gene

Localization for LINC00160 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00160 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00160 Gene

Pathways & Interactions for LINC00160 Gene

PathCards logo

SuperPathways for LINC00160 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00160 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00160 Gene

Drugs & Compounds for LINC00160 Gene

No Compound Related Data Available

Transcripts for LINC00160 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00160 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C4D7_9606 lncRNA 700 3

RefSeq: NR_024351,

LNCipedia: LINC00160:1,

NONCODE: NONHSAT081887.2,

URS000001828A_9606 lncRNA 699 2

Ensembl: ENST00000430635 (view in UCSC) ,

LNCipedia: LINC00160:2,

URS0000E88A91_9606 lncRNA 979 1

Ensembl: ENST00000651753 (view in UCSC) ,

URS00009B4D10_9606 lncRNA 675 2

LncBook: HSALNT0273121,

NONCODE: NONHSAT191425.1,

URS0001BF07D7_9606 lncRNA 793 1

LncBook: HSALNT0273116,

LINC00160 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00160 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00160 Gene

No ASD Table

Relevant External Links for LINC00160 Gene

GeneLoc Exon Structure for
LINC00160

Expression for LINC00160 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00160 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00160 Gene

This gene is overexpressed in Minor Salivary Gland (x21.3), Vagina (x8.5), Muscle - Skeletal (x6.9), and Cervix - Ectocervix (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00160

SOURCE GeneReport for Unigene cluster for LINC00160 Gene:

Hs.436868
genes like me logo Genes that share expression patterns with LINC00160: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00160 Gene

Orthologs for LINC00160 Gene

Evolution for LINC00160 Gene

ENSEMBL:
Gene Tree for LINC00160 (if available)
TreeFam:
Gene Tree for LINC00160 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00160

No data available for Orthologs for LINC00160 Gene

Paralogs for LINC00160 Gene

No data available for Paralogs for LINC00160 Gene

Variants for LINC00160 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00160 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00160 Gene

Variant ID Type Subtype PubMed ID
esv3646927 CNV loss 21293372
nsv1055971 CNV gain 25217958
nsv474366 CNV novel sequence insertion 20440878

Additional Variant Information for LINC00160 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00160
Leiden Open Variation Database (LOVD)
LINC00160

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00160 Gene

Disorders for LINC00160 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00160 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00160

genes like me logo Genes that share disorders with LINC00160: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00160 Gene

Publications for LINC00160 Gene

  1. Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer. (PMID: 26426411) Jonsson P … Williams C (Molecular endocrinology (Baltimore, Md.) 2015) 2 3 72
  2. Long non-coding RNA LINC00160 functions as a decoy of microRNA-132 to mediate autophagy and drug resistance in hepatocellular carcinoma via inhibition of PIK3R3. (PMID: 32067991) Zhang W … Liu K (Cancer letters 2020) 3
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3

Products for LINC00160 Gene

Sources for LINC00160 Gene