Aliases for LINC00114 Gene

Subcategory (RNA class) for LINC00114 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00114 Gene

  • Long Intergenic Non-Protein Coding RNA 114 2 3 5
  • LINC00114 2 5 165
  • NCRNA00114 3 4
  • C21orf24 3 4
  • Putative Uncharacterized Protein Encoded By LINC00114 4
  • Chromosome 21 Open Reading Frame 24 2
  • Non-Protein Coding RNA 114 2
  • NONHSAG032844.2 91
  • HSALNG0133081 164

External Ids for LINC00114 Gene

Previous HGNC Symbols for LINC00114 Gene

  • C21orf24
  • NCRNA00114

Previous GeneCards Identifiers for LINC00114 Gene

  • GC21M040111

Summaries for LINC00114 Gene

GeneCards Summary for LINC00114 Gene

LINC00114 (Long Intergenic Non-Protein Coding RNA 114) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00114 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00114 Gene

Genomics for LINC00114 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00114 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038755 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.8 +17.1 17093 2.5 RNF2 RFX1 ZHX2 GABPA ZIC2 POLR2A SP1 FOXJ2 CEBPA SCRT2 HMGN1 PSMG1 LCA5L LINC00114 lnc-ETS2-8 ETS2 ERG
GH21J038906 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.5 -138.0 -137964 9.6 ARHGAP35 CEBPG HNRNPL CREB1 GATAD2A ZBTB33 ARID3A TEAD4 YBX1 PRDM10 HMGN1 LCA5L PSMG1 LINC00114 lnc-ETS2-5 RF00017-3711 LOC400867 ENSG00000205622 ETS2
GH21J038759 Enhancer 0.8 ENCODE dbSUPER 10.1 +13.5 13533 0.6 PKNOX1 NFE2 ZSCAN29 MAFG NFIC MAFK RCOR1 JUND BHLHE40 MEIS2 lnc-ETS2-8 LINC00114 ETS2 ERG
GH21J038750 Enhancer 0.7 ENCODE dbSUPER 10.2 +21.1 21051 3.1 SP1 NR3C1 ZBTB25 PKNOX1 NR2F2 ZNF189 SPI1 POLR2A MYC FOXA3 LINC00114 lnc-ETS2-8 ETS2 ERG
GH21J038761 Enhancer 0.3 dbSUPER 10.8 +11.7 11707 1.4 ZNF512 PRDM1 lnc-ETS2-8 LINC00114 ETS2 ERG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00114 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00114 Gene

Genomic Locations for LINC00114 Gene
chr21:38,733,890-38,773,477
(GRCh38/hg38)
Size:
39,588 bases
Orientation:
Minus strand
chr21:40,110,879-40,145,401
(GRCh37/hg19)
Size:
34,523 bases
Orientation:
Minus strand

Genomic View for LINC00114 Gene

Genes around LINC00114 on UCSC Golden Path with GeneCards custom track
LINC00114 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00114 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00114 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00114 Gene

Proteins for LINC00114 Gene

  • Protein details for LINC00114 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6XXX2-CU024_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00114
    Protein Accession:
    Q6XXX2

    Protein attributes for LINC00114 Gene

    Size:
    140 amino acids
    Molecular mass:
    15753 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00114 Gene

Post-translational modifications for LINC00114 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00114 Gene

Domains & Families for LINC00114 Gene

Gene Families for LINC00114 Gene

Protein Domains for LINC00114 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00114: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00114 Gene

Function for LINC00114 Gene

Phenotypes From GWAS Catalog for LINC00114 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00114

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00114 Gene

Localization for LINC00114 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00114 Gene

Pathways & Interactions for LINC00114 Gene

PathCards logo

SuperPathways for LINC00114 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00114 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00114 Gene

Drugs & Compounds for LINC00114 Gene

No Compound Related Data Available

Transcripts for LINC00114 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00114 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000009D511_9606 lncRNA 1790 5

HGNC: 1265,

Ensembl: ENST00000411989 (view in UCSC) ,

LncBook: HSALNT0273548,

LNCipedia: LINC00114:11,

NONCODE: NONHSAT082120.2,

URS000014F4E1_9606 lncRNA 681 4

Ensembl: ENST00000448579 (view in UCSC) ,

LncBook: HSALNT0273549,

LNCipedia: LINC00114:12,

NONCODE: NONHSAT082121.2,

URS000051414D_9606 lncRNA 827 2

Ensembl: ENST00000429621 (view in UCSC) ,

LNCipedia: LINC00114:10,

URS0000EF2F9B_9606 lncRNA 1516 1

Ensembl: ENST00000663481 (view in UCSC) ,

URS0000CCE02D_9606 lncRNA 893 1

RefSeq: NR_027066,

LINC00114 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00114 Gene

1 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LINC00114

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00114 Gene

No ASD Table

Relevant External Links for LINC00114 Gene

GeneLoc Exon Structure for
LINC00114

Expression for LINC00114 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00114 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00114 Gene

This gene is overexpressed in Colon - Transverse (x9.7), Small Intestine - Terminal Ileum (x7.5), Testis (x4.9), and Cervix - Endocervix (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00114

SOURCE GeneReport for Unigene cluster for LINC00114 Gene:

Hs.278704

mRNA Expression by UniProt/SwissProt for LINC00114 Gene:

Q6XXX2-CU024_HUMAN
Tissue specificity: Expressed in a range of cell lines, including B-cell lymphoma and prostate.
genes like me logo Genes that share expression patterns with LINC00114: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00114 Gene

Orthologs for LINC00114 Gene

Evolution for LINC00114 Gene

ENSEMBL:
Gene Tree for LINC00114 (if available)
TreeFam:
Gene Tree for LINC00114 (if available)

No data available for Orthologs for LINC00114 Gene

Paralogs for LINC00114 Gene

No data available for Paralogs for LINC00114 Gene

Variants for LINC00114 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00114 Gene

SNP ID Clinical significance and condition Chr 21 pos Variation AA Info Type
rs11908743 - p.Ala52Ser
rs11908799 - p.Asn39Lys
rs16996776 - p.Met104Arg
rs2836662 - p.Ser21Thr

Additional dbSNP identifiers (rs#s) for LINC00114 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00114 Gene

Variant ID Type Subtype PubMed ID
dgv4431n100 CNV gain 25217958
dgv4432n100 CNV gain 25217958
dgv534n27 CNV gain 19166990
dgv7833n54 CNV gain 21841781
esv3568191 CNV loss 25503493
esv3575390 CNV gain 25503493
esv3647006 CNV loss 21293372
esv3647007 CNV gain 21293372
esv3647008 CNV loss 21293372
esv3647009 CNV loss 21293372
esv3893409 CNV gain 25118596
nsv1058591 CNV gain 25217958
nsv1160714 CNV duplication 26073780
nsv3517 CNV insertion 18451855
nsv470900 CNV gain 18288195
nsv516348 CNV gain 19592680
nsv953364 CNV duplication 24416366
nsv954290 CNV deletion 24416366

Additional Variant Information for LINC00114 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00114

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00114 Gene

Disorders for LINC00114 Gene

No disorders were found for LINC00114 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00114 Gene

Publications for LINC00114 Gene

  1. Detailed mapping of the ERG-ETS2 interval of human chromosome 21 and comparison with the region of conserved synteny on mouse chromosome 16. (PMID: 14693372) Owczarek CM … Hertzog PJ (Gene 2004) 3 4
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3

Products for LINC00114 Gene

Sources for LINC00114 Gene