Aliases for LINC00113 Gene

Subcategory (RNA class) for LINC00113 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00113 Gene

  • Long Intergenic Non-Protein Coding RNA 113 2 3 5
  • LINC00113 2 168
  • Chromosome 21 Open Reading Frame 23 2
  • Non-Protein Coding RNA 113 2
  • HSALNG0132462 167
  • NONHSAG032598 92
  • NCRNA00113 3
  • C21orf23 3

External Ids for LINC00113 Gene

Previous HGNC Symbols for LINC00113 Gene

  • C21orf23
  • NCRNA00113

Previous GeneCards Identifiers for LINC00113 Gene

  • GC21P029095

Summaries for LINC00113 Gene

GeneCards Summary for LINC00113 Gene

LINC00113 (Long Intergenic Non-Protein Coding RNA 113) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00113 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00113 Gene

Genomics for LINC00113 Gene

GeneHancer (GH) Regulatory Elements for LINC00113 Gene

Promoters and enhancers for LINC00113 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J027701 Enhancer 0.6 ENCODE 0.4 -21.2 -21182 0.2 CTCF REST RAD21 ATF2 SMC3 MXI1 BRCA1 CEBPB JUND MAX LINC00113 piR-40110-436
GH21J027692 Enhancer 0.7 Ensembl ENCODE 0.3 -28.2 -28164 2.8 FOS STAT3 ATF2 SRF ZNF366 ZNF512 PRDM1 CEBPB ENSG00000223563 LINC00113 piR-40110-436
GH21J027681 Enhancer 0.5 Ensembl ENCODE 0.3 -40.7 -40724 2.1 JUND FOS piR-40110-436 LINC00113
GH21J027673 Enhancer 0.5 Ensembl ENCODE 0.3 -48.0 -48040 1.5 CEBPB EZH2 piR-40110-436 LINC01673 LINC00113
GH21J027740 Enhancer 0.2 Ensembl 0.4 +17.9 17922 0.2 piR-40348-024 LINC00113
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00113 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00113 Gene

Genomic Locations for LINC00113 Gene
chr21:27,722,379-27,751,238
(GRCh38/hg38)
Size:
28,860 bases
Orientation:
Plus strand
chr21:29,094,698-29,123,552
(GRCh37/hg19)
Size:
28,855 bases
Orientation:
Plus strand

Genomic View for LINC00113 Gene

Genes around LINC00113 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00113 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00113 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00113 Gene

Proteins for LINC00113 Gene

Post-translational modifications for LINC00113 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00113 Gene

Domains & Families for LINC00113 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00113 Gene

Function for LINC00113 Gene

Phenotypes From GWAS Catalog for LINC00113 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00113 Gene

Localization for LINC00113 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00113 Gene

Pathways & Interactions for LINC00113 Gene

PathCards logo

SuperPathways for LINC00113 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00113 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00113 Gene

Drugs & Compounds for LINC00113 Gene

No Compound Related Data Available

Transcripts for LINC00113 Gene

mRNA/cDNA for LINC00113 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00113 Gene

No ASD Table

Relevant External Links for LINC00113 Gene

GeneLoc Exon Structure for
LINC00113

Expression for LINC00113 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00113 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00113 Gene

This gene is overexpressed in Testis (x34.7) and Kidney - Cortex (x14.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00113

SOURCE GeneReport for Unigene cluster for LINC00113 Gene:

Hs.570434
genes like me logo Genes that share expression patterns with LINC00113: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00113 Gene

Orthologs for LINC00113 Gene

Evolution for LINC00113 Gene

ENSEMBL:
Gene Tree for LINC00113 (if available)
TreeFam:
Gene Tree for LINC00113 (if available)

No data available for Orthologs for LINC00113 Gene

Paralogs for LINC00113 Gene

No data available for Paralogs for LINC00113 Gene

Variants for LINC00113 Gene

Additional dbSNP identifiers (rs#s) for LINC00113 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00113 Gene

Variant ID Type Subtype PubMed ID
esv2669331 CNV deletion 23128226
esv2678150 CNV deletion 23128226
esv3646763 CNV gain 21293372
esv3646766 CNV loss 21293372
nsv1059134 CNV gain 25217958
nsv1059423 CNV gain 25217958
nsv459229 CNV gain 19166990
nsv587342 CNV gain 21841781

Additional Variant Information for LINC00113 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00113

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00113 Gene

Disorders for LINC00113 Gene

Additional Disease Information for LINC00113

No disorders were found for LINC00113 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00113 Gene

Publications for LINC00113 Gene

  1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 54

Products for LINC00113 Gene

Sources for LINC00113 Gene