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Aliases for LINC00112 Gene

Subcategory (RNA class) for LINC00112 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00112 Gene

  • Long Intergenic Non-Protein Coding RNA 112 2 3 5
  • Chromosome 21 Open Reading Frame 22 2
  • Non-Protein Coding RNA 112 2
  • NCRNA00112 3
  • C21orf22 3

External Ids for LINC00112 Gene

Previous HGNC Symbols for LINC00112 Gene

  • C21orf22
  • NCRNA00112

Previous GeneCards Identifiers for LINC00112 Gene

  • GC21P043137

Summaries for LINC00112 Gene

GeneCards Summary for LINC00112 Gene

LINC00112 (Long Intergenic Non-Protein Coding RNA 112) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00112 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00112 Gene

Genomics for LINC00112 Gene

GeneHancer (GH) Regulatory Elements for LINC00112 Gene

Promoters and enhancers for LINC00112 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J041710 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 600.7 -1.8 -1787 8.3 ZNF652 ELF3 CEBPG RERE NCOA3 TFE3 SP1 HNF1A PPARG ZNF644 LINC00479 LINC00112 PRDM15 LINC00111 GC21P041658
GH21J041760 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 +49.5 49507 10.8 ZNF652 SP1 ELF3 POLR2A CEBPG RERE ZSCAN21 AHR TFE3 SP7 RIPK4 LOC102724800 LINC00479 PRDM15 ENSG00000236883 LINC00112 MX2 ZBTB21 MX1 ABCG1
GH21J041677 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 12.8 -34.6 -34553 9 MTA3 ZNF121 CEBPG NFIB NCOA3 MAFK MYC TFE3 ELF1 SP7 PRDM15 LINC00112 LINC00479 ENSG00000236883 UMODL1-AS1 LINC00111 GC21P041658
GH21J041756 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 +36.3 36324 5.3 ELF3 CEBPG RERE MYC TFE3 SP7 SP1 SP5 KLF14 HMG20B LINC00479 LINC00112 MIR6814 RIPK4
GH21J041629 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.1 -83.7 -83735 6.2 NFIB SP7 ZNF548 KLF14 PRDM1 HDGF FOSL2 CREB1 CEBPG GLIS2 PRDM15 ENSG00000227698 LINC00112 LINC00479 ENSG00000236545 ENSG00000251778 ZBTB21 LOC105372812 LOC105372809
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00112 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00112 Gene

Genomic Locations for LINC00112 Gene
chr21:41,716,436-41,717,582
(GRCh38/hg38)
Size:
1,147 bases
Orientation:
Plus strand
chr21:43,136,596-43,137,742
(GRCh37/hg19)
Size:
1,147 bases
Orientation:
Plus strand

Genomic View for LINC00112 Gene

Genes around LINC00112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00112 Gene

Proteins for LINC00112 Gene

Post-translational modifications for LINC00112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00112 Gene

Domains & Families for LINC00112 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00112 Gene

Function for LINC00112 Gene

Phenotypes From GWAS Catalog for LINC00112 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00112 Gene

Localization for LINC00112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00112 Gene

Pathways & Interactions for LINC00112 Gene

PathCards logo

SuperPathways for LINC00112 Gene

No Data Available

Interacting Proteins for LINC00112 Gene

Gene Ontology (GO) - Biological Process for LINC00112 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00112 Gene

Drugs & Compounds for LINC00112 Gene

No Compound Related Data Available

Transcripts for LINC00112 Gene

mRNA/cDNA for LINC00112 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LINC00112 Gene

Long intergenic non-protein coding RNA 112:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00112 Gene

No ASD Table

Relevant External Links for LINC00112 Gene

GeneLoc Exon Structure for
LINC00112
ECgene alternative splicing isoforms for
LINC00112

Expression for LINC00112 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00112 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00112 Gene

This gene is overexpressed in Testis (x36.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00112 Gene:

LINC00112

SOURCE GeneReport for Unigene cluster for LINC00112 Gene:

Hs.98186
genes like me logo Genes that share expression patterns with LINC00112: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00112 Gene

Orthologs for LINC00112 Gene

Evolution for LINC00112 Gene

ENSEMBL:
Gene Tree for LINC00112 (if available)
TreeFam:
Gene Tree for LINC00112 (if available)

No data available for Orthologs for LINC00112 Gene

Paralogs for LINC00112 Gene

No data available for Paralogs for LINC00112 Gene

Variants for LINC00112 Gene

Sequence variations from dbSNP and Humsavar for LINC00112 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1002167087 -- 41,716,530(+) C/T non_coding_transcript_variant
rs1002302801 -- 41,716,713(+) C/G/T intron_variant
rs1003013240 -- 41,714,723(+) T/C upstream_transcript_variant
rs1003306138 -- 41,717,994(+) A/G downstream_transcript_variant
rs1003355236 -- 41,715,691(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00112 Gene

Variant ID Type Subtype PubMed ID
dgv813e199 CNV deletion 23128226
esv3647069 CNV loss 21293372
esv3893416 CNV gain 25118596
nsv1065094 CNV loss 25217958

Additional Variant Information for LINC00112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00112 Gene

Disorders for LINC00112 Gene

Additional Disease Information for LINC00112

No disorders were found for LINC00112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00112 Gene

Publications for LINC00112 Gene

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A … Antonarakis SE (Genomics 2001) 3 58
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 58

Products for LINC00112 Gene

Sources for LINC00112 Gene

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