Aliases for LINC00112 Gene

Subcategory (RNA class) for LINC00112 Gene


Quality Score for this RNA gene is


Aliases for LINC00112 Gene

  • Long Intergenic Non-Protein Coding RNA 112 2 3 5
  • LINC00112 2 170
  • Chromosome 21 Open Reading Frame 22 2
  • Non-Protein Coding RNA 112 2
  • NONHSAG032916 94
  • HSALNG0133238 169
  • NCRNA00112 3
  • C21orf22 3

External Ids for LINC00112 Gene

Previous HGNC Symbols for LINC00112 Gene

  • C21orf22
  • NCRNA00112

Previous GeneCards Identifiers for LINC00112 Gene

  • GC21P043137

Summaries for LINC00112 Gene

GeneCards Summary for LINC00112 Gene

LINC00112 (Long Intergenic Non-Protein Coding RNA 112) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00112 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00112 Gene

Genomics for LINC00112 Gene

GeneHancer (GH) Regulatory Elements for LINC00112 Gene

Promoters and enhancers for LINC00112 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J041710 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.7 -1748 7.1 MLX RBPJ TCF7L2 NR2F6 ZNF217 MIXL1 HLF MNT ZNF652 RERE LINC00479 LINC00112 PRDM15 lnc-RIPK4-2 LINC00111
GH21J041760 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 +50.1 50137 10.8 CTCF ZBTB6 MLX RBPJ POLR2A CTBP1 NR2F6 MIXL1 HLF RAD21 RIPK4 LOC102724800 LINC00479 PRDM15 ENSG00000236883 LINC00112 MX2 ZBTB21 MX1 ABCG1
GH21J041677 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.8 -34.0 -34020 8.8 E2F8 SIN3A CTCF RBPJ POLR2A USF2 NR2F1 NR2F6 ATF1 ZNF217 PRDM15 LINC00112 LINC00479 ENSG00000236883 UMODL1-AS1 LINC00111
GH21J041756 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +37.4 37371 6.8 FOXA1 RBPJ NR2F1 NR2F6 MIXL1 HLF MNT RERE ELF3 SP1 LINC00479 LINC00112 PRDM15 MIR6814 RIPK4
GH21J041782 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.9 +69.3 69295 5.4 ZBTB40 GATA3 TCF7L2 ZNF217 MIXL1 ZNF701 HLF ZNF121 MNT TEAD4 PRDM15 ENSG00000233754 ENSG00000227698 LINC00112 LINC00479 TFF3 lnc-PRDM15-1 lnc-UMODL1-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00112 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00112 Gene

Genomic Locations for LINC00112 Gene
2,170 bases
Plus strand
1,147 bases
Plus strand

Genomic View for LINC00112 Gene

Genes around LINC00112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00112 Gene

Proteins for LINC00112 Gene

Post-translational modifications for LINC00112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00112 Gene

Domains & Families for LINC00112 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00112 Gene

Function for LINC00112 Gene

Phenotypes From GWAS Catalog for LINC00112 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00112 Gene

Localization for LINC00112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00112 Gene

Pathways & Interactions for LINC00112 Gene

PathCards logo

SuperPathways for LINC00112 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00112 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00112 Gene

Drugs & Compounds for LINC00112 Gene

No Compound Related Data Available

Transcripts for LINC00112 Gene

mRNA/cDNA for LINC00112 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(8) LNCipedia transcripts :
(5) LncBook transcripts :
(5) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00112 Gene

No ASD Table

Relevant External Links for LINC00112 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00112 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00112 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00112 Gene

This gene is overexpressed in Testis (x36.3).

NURSA nuclear receptor signaling pathways regulating expression of LINC00112 Gene:


SOURCE GeneReport for Unigene cluster for LINC00112 Gene:

genes like me logo Genes that share expression patterns with LINC00112: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00112 Gene

Orthologs for LINC00112 Gene

Evolution for LINC00112 Gene

Gene Tree for LINC00112 (if available)
Gene Tree for LINC00112 (if available)

No data available for Orthologs for LINC00112 Gene

Paralogs for LINC00112 Gene

No data available for Paralogs for LINC00112 Gene

Variants for LINC00112 Gene

Sequence variations from dbSNP and Humsavar for LINC00112 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1002167087 -- 41,716,530(+) C/T non_coding_transcript_variant
rs1002302801 -- 41,716,713(+) C/G/T intron_variant
rs1003013240 -- 41,714,723(+) T/C upstream_transcript_variant
rs1003306138 -- 41,717,994(+) A/G downstream_transcript_variant
rs1003355236 -- 41,715,691(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00112 Gene

Variant ID Type Subtype PubMed ID
dgv813e199 CNV deletion 23128226
esv3647069 CNV loss 21293372
esv3893416 CNV gain 25118596
nsv1065094 CNV loss 25217958

Additional Variant Information for LINC00112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00112 Gene

Disorders for LINC00112 Gene

Additional Disease Information for LINC00112

No disorders were found for LINC00112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00112 Gene

Publications for LINC00112 Gene

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A … Antonarakis SE (Genomics 2001) 3 56
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 56

Products for LINC00112 Gene

Sources for LINC00112 Gene