Aliases for LINC00112 Gene

Subcategory (RNA class) for LINC00112 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00112 Gene

  • Long Intergenic Non-Protein Coding RNA 112 2 3 5
  • LINC00112 2 5 165
  • Chromosome 21 Open Reading Frame 22 2
  • Non-Protein Coding RNA 112 2
  • NONHSAG032916.2 91
  • HSALNG0133238 164
  • NCRNA00112 3
  • C21orf22 3

External Ids for LINC00112 Gene

Previous HGNC Symbols for LINC00112 Gene

  • C21orf22
  • NCRNA00112

Previous GeneCards Identifiers for LINC00112 Gene

  • GC21P043137

Summaries for LINC00112 Gene

GeneCards Summary for LINC00112 Gene

LINC00112 (Long Intergenic Non-Protein Coding RNA 112) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00112 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00112 Gene

Genomics for LINC00112 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00112 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00112 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00112 Gene

Genomic Locations for LINC00112 Gene
chr21:41,715,806-41,717,975
(GRCh38/hg38)
Size:
2,170 bases
Orientation:
Plus strand
chr21:43,136,596-43,137,742
(GRCh37/hg19)
Size:
1,147 bases
Orientation:
Plus strand

Genomic View for LINC00112 Gene

Genes around LINC00112 on UCSC Golden Path with GeneCards custom track
LINC00112 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00112 Gene

Proteins for LINC00112 Gene

Post-translational modifications for LINC00112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00112 Gene

Domains & Families for LINC00112 Gene

Gene Families for LINC00112 Gene

genes like me logo Genes that share domains with LINC00112: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00112 Gene

Function for LINC00112 Gene

Phenotypes From GWAS Catalog for LINC00112 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00112 Gene

Localization for LINC00112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00112 Gene

Pathways & Interactions for LINC00112 Gene

PathCards logo

SuperPathways for LINC00112 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00112 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00112 Gene

Drugs & Compounds for LINC00112 Gene

No Compound Related Data Available

Transcripts for LINC00112 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00112 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E5EF_9606 lncRNA 524 2

HGNC: 1263,

RefSeq: NR_024028,

URS0000EEC439_9606 lncRNA 1235 1

Ensembl: ENST00000669036 (view in UCSC) ,

URS0000EF1157_9606 lncRNA 1172 1

Ensembl: ENST00000661908 (view in UCSC) ,

URS0000EEB9C3_9606 lncRNA 1149 1

Ensembl: ENST00000667584 (view in UCSC) ,

URS0000EF37BA_9606 lncRNA 1147 1

Ensembl: ENST00000657727 (view in UCSC) ,

LINC00112 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00112 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00112 Gene

No ASD Table

Relevant External Links for LINC00112 Gene

GeneLoc Exon Structure for
LINC00112

Expression for LINC00112 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00112 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00112 Gene

This gene is overexpressed in Testis (x36.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00112

SOURCE GeneReport for Unigene cluster for LINC00112 Gene:

Hs.98186
genes like me logo Genes that share expression patterns with LINC00112: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00112 Gene

Orthologs for LINC00112 Gene

Evolution for LINC00112 Gene

ENSEMBL:
Gene Tree for LINC00112 (if available)
TreeFam:
Gene Tree for LINC00112 (if available)

No data available for Orthologs for LINC00112 Gene

Paralogs for LINC00112 Gene

No data available for Paralogs for LINC00112 Gene

Variants for LINC00112 Gene

Additional dbSNP identifiers (rs#s) for LINC00112 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00112 Gene

Variant ID Type Subtype PubMed ID
dgv813e199 CNV deletion 23128226
esv3647069 CNV loss 21293372
esv3893416 CNV gain 25118596
nsv1065094 CNV loss 25217958

Additional Variant Information for LINC00112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00112 Gene

Disorders for LINC00112 Gene

Additional Disease Information for LINC00112

No disorders were found for LINC00112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00112 Gene

Publications for LINC00112 Gene

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A … Antonarakis SE (Genomics 2001) 3
  2. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3

Products for LINC00112 Gene

Sources for LINC00112 Gene