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Aliases for LINC00028 Gene

Subcategory (RNA class) for LINC00028 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00028 Gene

  • Long Intergenic Non-Protein Coding RNA 28 2 3 5
  • Chromosome 20 Open Reading Frame 93 2
  • Non-Protein Coding RNA 28 2
  • DJ1093G12.6 3
  • NCRNA00028 3
  • C20orf93 3

External Ids for LINC00028 Gene

Previous HGNC Symbols for LINC00028 Gene

  • C20orf93
  • NCRNA00028

Previous GeneCards Identifiers for LINC00028 Gene

  • GC20P030074

Summaries for LINC00028 Gene

GeneCards Summary for LINC00028 Gene

LINC00028 (Long Intergenic Non-Protein Coding RNA 28) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00028 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00028 Gene

Genomics for LINC00028 Gene

GeneHancer (GH) Regulatory Elements for LINC00028 Gene

Promoters and enhancers for LINC00028 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J031484 Promoter/Enhancer 1.1 Ensembl ENCODE 600.7 -0.1 -88 2.4 ZNF148 SP1 POLR2A IKZF1 GABPA ZKSCAN1 JUND NFIC NR2F2 NRF1 LINC00028 DEFB124 HM13 DEFB123 REM1
GH20J031840 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 11.6 +357.7 357744 5.5 ZNF473 MLLT1 GTF2F1 ZSCAN21 CDC5L IKZF1 MCM2 TRIM24 PRDM1 MTA1 GC20M031845 ASXL1 MYLK2 TM9SF4 TSPY26P TTLL9 POFUT1 BAK1P1 PLAGL2 PDRG1
GH20J031495 Enhancer 0.9 Ensembl ENCODE 0.4 +11.1 11124 3.4 CSDE1 RFX1 PRDM10 ZIC2 SP1 ZNF341 CTBP1 BMI1 MXI1 ZBTB17 HM13 DEFB122 DEFB121 COX4I2 TRS-AGA7-1 LINC00028
GH20J031494 Enhancer 0.8 ENCODE 0.4 +8.5 8535 0.2 CC2D1A CTCF MLLT1 CEBPG TRIM24 ZNF644 CREB1 CEBPA MNT CEBPB HM13 TRS-AGA7-1 LINC00028
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00028 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00028 Gene

Genomic Locations for LINC00028 Gene
chr20:31,485,778-31,487,574
(GRCh38/hg38)
Size:
1,797 bases
Orientation:
Plus strand
chr20:30,073,581-30,075,377
(GRCh37/hg19)
Size:
1,797 bases
Orientation:
Plus strand

Genomic View for LINC00028 Gene

Genes around LINC00028 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00028 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00028 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00028 Gene

Proteins for LINC00028 Gene

Post-translational modifications for LINC00028 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00028 Gene

Domains & Families for LINC00028 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00028 Gene

Function for LINC00028 Gene

Phenotypes From GWAS Catalog for LINC00028 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00028 Gene

Localization for LINC00028 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00028 Gene

Pathways & Interactions for LINC00028 Gene

PathCards logo

SuperPathways for LINC00028 Gene

No Data Available

Interacting Proteins for LINC00028 Gene

Gene Ontology (GO) - Biological Process for LINC00028 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00028 Gene

Drugs & Compounds for LINC00028 Gene

No Compound Related Data Available

Transcripts for LINC00028 Gene

mRNA/cDNA for LINC00028 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00028 Gene

Long intergenic non-protein coding RNA 28:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00028 Gene

No ASD Table

Relevant External Links for LINC00028 Gene

GeneLoc Exon Structure for
LINC00028
ECgene alternative splicing isoforms for
LINC00028

Expression for LINC00028 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00028 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00028 Gene:

LINC00028

SOURCE GeneReport for Unigene cluster for LINC00028 Gene:

Hs.283478
genes like me logo Genes that share expression patterns with LINC00028: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00028 Gene

Orthologs for LINC00028 Gene

Evolution for LINC00028 Gene

ENSEMBL:
Gene Tree for LINC00028 (if available)
TreeFam:
Gene Tree for LINC00028 (if available)

No data available for Orthologs for LINC00028 Gene

Paralogs for LINC00028 Gene

No data available for Paralogs for LINC00028 Gene

Variants for LINC00028 Gene

Sequence variations from dbSNP and Humsavar for LINC00028 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000002626 -- 31,487,886(+) G/A downstream_transcript_variant
rs1001697365 -- 31,486,324(+) G/C intron_variant
rs1001802990 -- 31,484,095(+) T/C upstream_transcript_variant
rs1002137706 -- 31,487,711(+) G/A downstream_transcript_variant
rs1004200559 -- 31,484,403(+) G/C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00028 Gene

Variant ID Type Subtype PubMed ID
dgv4300n100 CNV gain 25217958
esv2763228 CNV gain 21179565
nsv458961 CNV gain 19166990
nsv470546 CNV gain 18288195
nsv585911 CNV gain 21841781

Additional Variant Information for LINC00028 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00028

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00028 Gene

Disorders for LINC00028 Gene

Additional Disease Information for LINC00028

No disorders were found for LINC00028 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00028 Gene

Publications for LINC00028 Gene

No publications were found for LINC00028 Gene.

Products for LINC00028 Gene

Sources for LINC00028 Gene

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