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Aliases for LIN28B-AS1 Gene

Subcategory (RNA class) for LIN28B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LIN28B-AS1 Gene

  • LIN28B Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 577 2 3
  • Chromosome 6 Open Reading Frame 220 2
  • DJ439I14.1 3
  • LINC00577 3
  • C6orf220 3

External Ids for LIN28B-AS1 Gene

Previous HGNC Symbols for LIN28B-AS1 Gene

  • C6orf220
  • LINC00577

Previous GeneCards Identifiers for LIN28B-AS1 Gene

  • GC06M104937

Summaries for LIN28B-AS1 Gene

GeneCards Summary for LIN28B-AS1 Gene

LIN28B-AS1 (LIN28B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LIN28B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIN28B-AS1 Gene

Genomics for LIN28B-AS1 Gene

GeneHancer (GH) Regulatory Elements for LIN28B-AS1 Gene

Promoters and enhancers for LIN28B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I104940 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 557 +0.4 365 2.1 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 GLI4 ZNF2 ZNF48 ETS1 LIN28B-AS1 HACE1 LIN28B
GH06I104951 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.5 -14.5 -14472 8.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 POLR2B LIN28B LIN28B-AS1 HACE1 GC06M105046 RNU6-1106P
GH06I104970 Enhancer 0.7 Ensembl dbSUPER 0.3 -28.9 -28854 0.2 MITF USF1 PRDM6 ZNF407 NR2C1 USF2 PRDM1 LIN28B-AS1 LIN28B GC06M105046 RNU6-1106P
GH06I104968 Enhancer 0.7 ENCODE dbSUPER 0.3 -28.1 -28122 1.1 MITF SP1 PRDM6 FOXA2 TCF7 TCF7L2 ZNF558 HACE1 LIN28B-AS1 LIN28B GC06M105046 RNU6-1106P
GH06I104907 Enhancer 0.5 ENCODE 0.3 +33.1 33136 2 SMARCE1 ZNF217 CTBP1 DPF2 HACE1 GC06M104892 LIN28B LIN28B-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LIN28B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LIN28B-AS1 Gene

Genomic Locations for LIN28B-AS1 Gene
chr6:104,864,464-104,941,447
(GRCh38/hg38)
Size:
76,984 bases
Orientation:
Minus strand
chr6:105,384,169-105,388,402
(GRCh37/hg19)

Genomic View for LIN28B-AS1 Gene

Genes around LIN28B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LIN28B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIN28B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIN28B-AS1 Gene

Proteins for LIN28B-AS1 Gene

Post-translational modifications for LIN28B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIN28B-AS1 Gene

Domains & Families for LIN28B-AS1 Gene

Suggested Antigen Peptide Sequences for LIN28B-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LIN28B-AS1 Gene

Function for LIN28B-AS1 Gene

Phenotypes From GWAS Catalog for LIN28B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIN28B-AS1 Gene

Localization for LIN28B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LIN28B-AS1 Gene

Pathways & Interactions for LIN28B-AS1 Gene

SuperPathways for LIN28B-AS1 Gene

No Data Available

Interacting Proteins for LIN28B-AS1 Gene

Gene Ontology (GO) - Biological Process for LIN28B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LIN28B-AS1 Gene

Drugs & Compounds for LIN28B-AS1 Gene

No Compound Related Data Available

Transcripts for LIN28B-AS1 Gene

mRNA/cDNA for LIN28B-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LIN28B-AS1 Gene

No ASD Table

Relevant External Links for LIN28B-AS1 Gene

GeneLoc Exon Structure for
LIN28B-AS1
ECgene alternative splicing isoforms for
LIN28B-AS1

Expression for LIN28B-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LIN28B-AS1 Gene

Orthologs for LIN28B-AS1 Gene

Evolution for LIN28B-AS1 Gene

ENSEMBL:
Gene Tree for LIN28B-AS1 (if available)
TreeFam:
Gene Tree for LIN28B-AS1 (if available)

No data available for Orthologs for LIN28B-AS1 Gene

Paralogs for LIN28B-AS1 Gene

No data available for Paralogs for LIN28B-AS1 Gene

Variants for LIN28B-AS1 Gene

Sequence variations from dbSNP and Humsavar for LIN28B-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000108298 -- 104,942,202(-) A/G upstream_transcript_variant
rs1000335268 -- 104,936,668(-) G/C non_coding_transcript_variant
rs1000970698 -- 104,935,880(-) G/A/C downstream_transcript_variant
rs1001011081 -- 104,940,690(-) T/C upstream_transcript_variant
rs1001390945 -- 104,938,555(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LIN28B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv216e55 CNV gain 17911159
esv23149 CNV loss 19812545
esv2759461 CNV gain 17122850
esv3610248 CNV gain 21293372
nsv1028763 CNV gain 25217958
nsv604433 CNV loss 21841781
nsv818450 CNV gain 17921354

Additional Variant Information for LIN28B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIN28B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LIN28B-AS1 Gene

Disorders for LIN28B-AS1 Gene

No disorders were found for LIN28B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIN28B-AS1 Gene

Publications for LIN28B-AS1 Gene

No publications were found for LIN28B-AS1 Gene.

Products for LIN28B-AS1 Gene

Sources for LIN28B-AS1 Gene

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