Aliases for LILRP2 Gene

Aliases for LILRP2 Gene

  • Leukocyte Immunoglobulin-Like Receptor Pseudogene 2 2 3 5
  • CD85m 2 3
  • ILT10 2 3
  • Leukocyte Immunoglobulin-Like Receptor, Subfamily A (Without TM Domain), Member 5 3
  • Immunoglobulin-Like Transcript 10 3
  • LILRA5 3
  • LILRP2 5

External Ids for LILRP2 Gene

Previous GeneCards Identifiers for LILRP2 Gene

  • GC19P059912
  • GC19P055220
  • GC19P051541
  • GC19P054838
  • GC19P054908
  • GC19P055120
  • GC19P055145
  • GC19P055188
  • GC19P055321
  • GC19P054927
  • GC19P054943
  • GC19P054968
  • GC19P054988
  • GC19P055010
  • GC19P055037
  • GC19P055064
  • GC19P055092
  • GC19P055473
  • GC19P055821

Summaries for LILRP2 Gene

GeneCards Summary for LILRP2 Gene

LILRP2 (Leukocyte Immunoglobulin-Like Receptor Pseudogene 2) is a Pseudogene.

Additional gene information for LILRP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LILRP2 Gene

Genomics for LILRP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LILRP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J054707 Enhancer 0.4 Ensembl 250.7 +0.3 285 1.2 MAX POLR2A TCF12 RUNX3 LILRP2 NONHSAG026542.2 HSALNG0127567 KIR3DL3 LILRB4
GH19J054615 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 7.1 -89.8 -89795 4.6 BCLAF1 SP1 POLR2A BCL11A TRIM22 IRF4 CBFB ASH2L TAF1 BHLHE40 LILRB1 LILRA2 KIR3DX1 LILRP2 LILRB2 piR-30791-044 LILRB4
GH19J054624 Enhancer 0.2 ENCODE 8 -84.6 -84581 0.5 LILRB1 LILRP2 LILRB2 piR-30791-044 LILRB4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LILRP2 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LILRP2 gene promoter:
  • AML1a
  • GCNF
  • GCNF-1
  • GCNF-2
  • Pax-2
  • Pax-2a
  • RP58
  • SREBP-1b
  • SREBP-1c

Genomic Locations for LILRP2 Gene

Latest Assembly
chr19:54,707,916-54,713,453
(GRCh38/hg38)
Size:
5,538 bases
Orientation:
Plus strand

Previous Assembly
chr19:55,219,700-55,224,955
(GRCh37/hg19 by Entrez Gene)
Size:
5,256 bases
Orientation:
Plus strand

chr19:55,219,700-55,224,955
(GRCh37/hg19 by Ensembl)
Size:
5,256 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr19(ALT_REF_LOCI_1):613,910-619,137 (+)
  • chr19(ALT_REF_LOCI_10):233,732-239,268 (-)
  • chr19(ALT_REF_LOCI_11):155,324-160,860 (-)
  • chr19(ALT_REF_LOCI_12):141,973-147,507 (-)
  • chr19(ALT_REF_LOCI_13):155,952-161,488 (-)
  • chr19(ALT_REF_LOCI_14):189,164-194,700 (-)
  • chr19(ALT_REF_LOCI_15):194,952-199,966 (-)
  • chr19(ALT_REF_LOCI_16):140,462-145,996 (-)
  • chr19(ALT_REF_LOCI_17):155,623-161,159 (-)
  • chr19(ALT_REF_LOCI_18):169,424-174,960 (-)
  • chr19(ALT_REF_LOCI_19):155,605-161,141 (-)
  • chr19(ALT_REF_LOCI_20):190,119-195,655 (-)
  • chr19(ALT_REF_LOCI_21):155,590-161,126 (-)
  • chr19(ALT_REF_LOCI_22):169,441-174,977 (-)
  • chr19(ALT_REF_LOCI_24):9,540-15,076 (+)
  • chr19(ALT_REF_LOCI_25):155,626-161,162 (-)
  • chr19(ALT_REF_LOCI_26):3-295 (+)
  • chr19(ALT_REF_LOCI_27):6,757-12,012 (+)
  • chr19(ALT_REF_LOCI_29):26-4,442 (+)
  • chr19(ALT_REF_LOCI_31):185,698-191,234 (-)
  • chr19(ALT_REF_LOCI_32):155,073-160,609 (-)
  • chr19(ALT_REF_LOCI_33):200,656-206,193 (-)
  • chr19(ALT_REF_LOCI_34):155,462-160,998 (-)
  • chr19(ALT_REF_LOCI_35):162,306-167,842 (-)
  • chr19(ALT_REF_LOCI_7):612,541-617,843 (+)
  • chr19(ALT_REF_LOCI_8):434,258-439,514 (+)
  • chr19(ALT_REF_LOCI_9):690,814-696,069 (+)
  • chr19(PATCHES):9,540-15,076 (+)

Genomic View for LILRP2 Gene

Genes around LILRP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LILRP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LILRP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LILRP2 Gene

Post-translational modifications for LILRP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LILRP2 Gene

Domains & Families for LILRP2 Gene

Gene Families for LILRP2 Gene

HGNC:
genes like me logo Genes that share domains with LILRP2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LILRP2 Gene

Function for LILRP2 Gene

Phenotypes From GWAS Catalog for LILRP2 Gene

genes like me logo Genes that share phenotypes with LILRP2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LILRP2 Gene

Localization for LILRP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LILRP2 Gene

Pathways & Interactions for LILRP2 Gene

PathCards logo

SuperPathways for LILRP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LILRP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LILRP2 Gene

Drugs & Compounds for LILRP2 Gene

No Compound Related Data Available

Transcripts for LILRP2 Gene

mRNA/cDNA for LILRP2 Gene

2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LILRP2 Gene

No ASD Table

Relevant External Links for LILRP2 Gene

GeneLoc Exon Structure for
LILRP2

Expression for LILRP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LILRP2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LILRP2

SOURCE GeneReport for Unigene cluster for LILRP2 Gene:

Hs.202680
genes like me logo Genes that share expression patterns with LILRP2: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LILRP2 Gene

Orthologs for LILRP2 Gene

Evolution for LILRP2 Gene

ENSEMBL:
Gene Tree for LILRP2 (if available)
TreeFam:
Gene Tree for LILRP2 (if available)
Alliance of Genome Resources:
Additional Orthologs for LILRP2

No data available for Orthologs for LILRP2 Gene

Paralogs for LILRP2 Gene

No data available for Paralogs for LILRP2 Gene

Variants for LILRP2 Gene

Structural Variations from Database of Genomic Variants (DGV) for LILRP2 Gene

Variant ID Type Subtype PubMed ID
dgv16e196 CNV duplication 17116639
dgv17e196 CNV deletion 17116639
esv1478232 CNV insertion 17803354
esv2667609 CNV deletion 23128226
esv2718872 CNV deletion 23290073
esv2758771 CNV gain+loss 17122850
nsv1132889 CNV insertion 24896259
nsv1146122 CNV deletion 26484159
nsv428372 CNV gain+loss 18775914
nsv437834 CNV loss 16327808
nsv469656 CNV loss 16826518
nsv471706 CNV loss 15918152
nsv580244 CNV loss 21841781
nsv833879 CNV gain+loss 17160897

Additional Variant Information for LILRP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LILRP2
Leiden Open Variation Database (LOVD)
LILRP2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for LILRP2 Gene

Disorders for LILRP2 Gene

Additional Disease Information for LILRP2

No disorders were found for LILRP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LILRP2 Gene

Publications for LILRP2 Gene

  1. Extensive gene duplications and a large inversion characterize the human leukocyte receptor cluster. (PMID: 10941842) Wende H … Ziegler A (Immunogenetics 2000) 2 3
  2. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. Isotypic variation of novel immunoglobulin-like transcript/killer cell inhibitory receptor loci in the leukocyte receptor complex. (PMID: 9862332) Torkar M … Wilson MJ (European journal of immunology 1998) 3

Products for LILRP2 Gene

Sources for LILRP2 Gene