Aliases for LIF-AS1 Gene

Subcategory (RNA class) for LIF-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LIF-AS1 Gene

  • LIF Antisense RNA 1 2 3 5
  • LIF-AS1 2 5 165
  • Lnc-LIF-AS 2 3
  • NONHSAG033661.2 91
  • HSALNG0134869 164

External Ids for LIF-AS1 Gene

Summaries for LIF-AS1 Gene

GeneCards Summary for LIF-AS1 Gene

LIF-AS1 (LIF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LIF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LIF-AS1 Gene

Genomics for LIF-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LIF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J030233 Promoter/Enhancer 0.6 Ensembl dbSUPER 600.7 -1.4 -1373 0.4 ZNF121 LIF-AS1 HSALNG0134867 LIF HORMAD2
GH22J030181 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 12.1 -51.6 -51639 4.2 JUND PRDM1 PKNOX1 ZNF24 DPF2 HDAC1 SOX6 EP300 ZBTB44 ZNF766 LIF ASCC2 HORMAD2-AS1 LOC105372988 LIF-AS1 MTMR3 DUSP18 OSM SF3A1 RPS3AP51
GH22J030278 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +44.2 44207 0.7 RFX1 ZBTB17 ZFHX2 ZNF768 POLR2A ZMYM3 HLF EGR2 ZNF121 OSM TBC1D10A LIF SEC14L2 LIF-AS1 ENSG00000249590 SLC35E4 MTMR3 DUSP18 SF3A1
GH22J030277 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 10.5 +42.5 42535 1.7 PRDM10 ZNF629 ZNF692 ZIC2 PATZ1 SP1 ZNF600 ZNF341 ZBTB20 ZBTB10 ENSG00000279699 lnc-CASTOR1-2 ENSG00000248751 TBC1D10A LIF SEC14L2 LIF-AS1 ENSG00000249590 RNF215 OSM
GH22J030270 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 10.9 +35.6 35615 1.3 JUND CEBPB CTBP1 ZNF316 MAFF FOS CREB1 MAFK MAFG CTCF piR-32214-443 piR-42491-147 OSM TBC1D10A ENSG00000248751 LIF-AS1 MTMR3 SLC35E4 DUSP18 SF3A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LIF-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LIF-AS1 Gene

Genomic Locations for LIF-AS1 Gene
chr22:30,235,374-30,240,540
(GRCh38/hg38)
Size:
5,167 bases
Orientation:
Plus strand
chr22:30,635,183-30,636,527
(GRCh37/hg19)
Size:
1,345 bases
Orientation:
Plus strand

Genomic View for LIF-AS1 Gene

Genes around LIF-AS1 on UCSC Golden Path with GeneCards custom track
LIF-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LIF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LIF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIF-AS1 Gene

Proteins for LIF-AS1 Gene

Post-translational modifications for LIF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LIF-AS1 Gene

Domains & Families for LIF-AS1 Gene

Gene Families for LIF-AS1 Gene

genes like me logo Genes that share domains with LIF-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LIF-AS1 Gene

Function for LIF-AS1 Gene

Phenotypes From GWAS Catalog for LIF-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LIF-AS1 Gene

Localization for LIF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LIF-AS1 Gene

Pathways & Interactions for LIF-AS1 Gene

PathCards logo

SuperPathways for LIF-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LIF-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LIF-AS1 Gene

Drugs & Compounds for LIF-AS1 Gene

No Compound Related Data Available

Transcripts for LIF-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LIF-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001747AF_9606 lncRNA 808 6

HGNC: 53473,

RefSeq: NR_149070,

Ensembl: ENST00000447565 (view in UCSC) ,

LncBook: HSALNT0276872,

LNCipedia: LIF-AS1:11,

NONCODE: NONHSAT084760.2,

URS0000D570B7_9606 lncRNA 3047 2

LncBook: HSALNT0276867,

LNCipedia: LIF-AS1:10,

URS0000D5CE0E_9606 lncRNA 1765 1

LNCipedia: LIF-AS1:7,

URS0000D572C3_9606 lncRNA 1325 1

LNCipedia: LIF-AS1:9,

URS0000D5DB96_9606 lncRNA 1257 1

LNCipedia: LIF-AS1:8,

LIF-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LIF-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LIF-AS1 Gene

No ASD Table

Relevant External Links for LIF-AS1 Gene

GeneLoc Exon Structure for
LIF-AS1

Expression for LIF-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LIF-AS1 Gene

Orthologs for LIF-AS1 Gene

Evolution for LIF-AS1 Gene

ENSEMBL:
Gene Tree for LIF-AS1 (if available)
TreeFam:
Gene Tree for LIF-AS1 (if available)

No data available for Orthologs for LIF-AS1 Gene

Paralogs for LIF-AS1 Gene

No data available for Paralogs for LIF-AS1 Gene

Variants for LIF-AS1 Gene

Additional dbSNP identifiers (rs#s) for LIF-AS1 Gene

Additional Variant Information for LIF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LIF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LIF-AS1 Gene

Disorders for LIF-AS1 Gene

Additional Disease Information for LIF-AS1

No disorders were found for LIF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LIF-AS1 Gene

Publications for LIF-AS1 Gene

  1. LncRNA expression profile of ΔNp63α in cervical squamous cancers and its suppressive effects on LIF expression. (PMID: 28391028) Qian L … Zhou Y (Cytokine 2017) 2 3

Products for LIF-AS1 Gene

Sources for LIF-AS1 Gene