Aliases for LHX5-AS1 Gene

Subcategory (RNA class) for LHX5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LHX5-AS1 Gene

  • LHX5 Antisense RNA 1 2 3 5
  • LHX5-AS1 2 5 165
  • LHX5 Antisense RNA 1 (Head To Head) 2 3
  • Locus 4010 2 3
  • Locus4010 2 3
  • NONHSAG012365.2 91
  • HSALNG0094159 164

External Ids for LHX5-AS1 Gene

Previous GeneCards Identifiers for LHX5-AS1 Gene

  • GC00U934761

Summaries for LHX5-AS1 Gene

GeneCards Summary for LHX5-AS1 Gene

LHX5-AS1 (LHX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LHX5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LHX5-AS1 Gene

Genomics for LHX5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LHX5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J113471 Promoter/Enhancer 0.8 EPDnew ENCODE 600.7 -0.1 -69 0.2 RFX1 POLR2A EZH2 ATF1 LHX5 LHX5-AS1 lnc-LHX5-1 SDS
GH12J113472 Enhancer 0.6 FANTOM5 ENCODE 600.7 +1.0 968 0.3 EZH2 SP1 EGR1 LHX5 LHX5-AS1 lnc-LHX5-1 SDSL piR-47675-026 RBM19
GH12J113474 Enhancer 0.3 ENCODE 600.7 +0.8 775 0 EZH2 EGR1 LHX5 LHX5-AS1 lnc-LHX5-1 piR-47675-026 RBM19
GH12J113475 Enhancer 0.3 ENCODE 600.7 +0.4 419 0.2 EZH2 LHX5 LHX5-AS1 lnc-LHX5-1 SDSL piR-47675-026 RBM19
GH12J113470 Enhancer 0.3 ENCODE 600.7 -1.0 -991 0.2 EZH2 LHX5 LHX5-AS1 lnc-LHX5-1 SDS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LHX5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LHX5-AS1 Gene

Genomic Locations for LHX5-AS1 Gene
chr12:113,472,002-113,480,624
(GRCh38/hg38)
Size:
8,623 bases
Orientation:
Plus strand

Genomic View for LHX5-AS1 Gene

Genes around LHX5-AS1 on UCSC Golden Path with GeneCards custom track
LHX5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LHX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LHX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LHX5-AS1 Gene

Proteins for LHX5-AS1 Gene

Post-translational modifications for LHX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LHX5-AS1 Gene

Domains & Families for LHX5-AS1 Gene

Gene Families for LHX5-AS1 Gene

genes like me logo Genes that share domains with LHX5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LHX5-AS1 Gene

Function for LHX5-AS1 Gene

Phenotypes From GWAS Catalog for LHX5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LHX5-AS1 Gene

Localization for LHX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LHX5-AS1 Gene

Pathways & Interactions for LHX5-AS1 Gene

PathCards logo

SuperPathways for LHX5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LHX5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LHX5-AS1 Gene

Drugs & Compounds for LHX5-AS1 Gene

No Compound Related Data Available

Transcripts for LHX5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LHX5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4C48_9606 lncRNA 379 5

HGNC: 49570,

RefSeq: NR_126425,

LncBook: HSALNT0195128,

LNCipedia: LHX5-AS1:1,

NONCODE: NONHSAT030847.2,

URS0000352149_9606 lncRNA 522 2

Ensembl: ENST00000551357 (view in UCSC) ,

LNCipedia: LHX5-AS1:2,

URS0000D576B4_9606 lncRNA 3111 2

LncBook: HSALNT0195131,

LNCipedia: LHX5-AS1:3,

URS0000D5E1BA_9606 lncRNA 519 2

LncBook: HSALNT0195130,

LNCipedia: LHX5-AS1:4,

URS0000E9CD60_9606 lncRNA 381 1

LncBook: HSALNT0289019,

LHX5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LHX5-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LHX5-AS1 Gene

No ASD Table

Relevant External Links for LHX5-AS1 Gene

GeneLoc Exon Structure for
LHX5-AS1

Expression for LHX5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LHX5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LHX5-AS1

genes like me logo Genes that share expression patterns with LHX5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LHX5-AS1 Gene

Orthologs for LHX5-AS1 Gene

Evolution for LHX5-AS1 Gene

ENSEMBL:
Gene Tree for LHX5-AS1 (if available)
TreeFam:
Gene Tree for LHX5-AS1 (if available)

No data available for Orthologs for LHX5-AS1 Gene

Paralogs for LHX5-AS1 Gene

No data available for Paralogs for LHX5-AS1 Gene

Variants for LHX5-AS1 Gene

Additional dbSNP identifiers (rs#s) for LHX5-AS1 Gene

Additional Variant Information for LHX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LHX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LHX5-AS1 Gene

Disorders for LHX5-AS1 Gene

Additional Disease Information for LHX5-AS1

No disorders were found for LHX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LHX5-AS1 Gene

Publications for LHX5-AS1 Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3

Products for LHX5-AS1 Gene

Sources for LHX5-AS1 Gene