Aliases for LHX1-DT Gene

Subcategory (RNA class) for LHX1-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LHX1-DT Gene

  • LHX1 Divergent Transcript 2 3 5
  • LHX1-DT 2 168
  • NONHSAG021617 92
  • HSALNG0116070 167

External Ids for LHX1-DT Gene

Additional External Ids for LHX1-DT Gene

Summaries for LHX1-DT Gene

GeneCards Summary for LHX1-DT Gene

LHX1-DT (LHX1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LHX1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LHX1-DT Gene

Genomics for LHX1-DT Gene

GeneHancer (GH) Regulatory Elements for LHX1-DT Gene

Promoters and enhancers for LHX1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J036935 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE 500.7 -0.2 -178 5 ZSCAN5C NRF1 RBAK ZFX ZIC2 REST ZBTB10 ZNF623 ZNF423 GABPA LHX1 LHX1-DT AATF ACACA ENSG00000276707
GH17J036918 Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas 0.4 +16.1 16070 5.5 ZNF217 ZSCAN5C TCF12 ZIC2 POLR2A HDAC2 ZNF341 RBM25 OSR2 KDM1A MRM1 LHX1-DT piR-50437-286
GH17J036927 Enhancer 0.8 ENCODE 0.4 +8.2 8170 1.2 NRF1 ZBTB11 HES1 MYC CTBP1 FOSL1 GABPA PBX2 SPI1 SKIL LHX1-DT piR-50437-286
GH17J036901 Enhancer 0.8 Ensembl ENCODE 0.3 +34.9 34894 1.3 USF1 SKI NR3C1 FOSL2 SMAD4 JUN JUND GLIS1 ZKSCAN1 TEAD3 piR-50437-286 LHX1 LHX1-DT piR-50437-285
GH17J036930 Enhancer 0.5 FANTOM5 0.4 +5.7 5737 0.3 WT1 SMARCA4 ZNF366 EZH2 SUZ12 PRDM1 LHX1 LHX1-DT piR-50437-286
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LHX1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for LHX1-DT Gene

Genomic Locations for LHX1-DT Gene
chr17:36,861,674-36,936,723
(GRCh38/hg38)
Size:
75,050 bases
Orientation:
Minus strand

Genomic View for LHX1-DT Gene

Genes around LHX1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LHX1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LHX1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LHX1-DT Gene

Proteins for LHX1-DT Gene

Post-translational modifications for LHX1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LHX1-DT Gene

Domains & Families for LHX1-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LHX1-DT Gene

Function for LHX1-DT Gene

Phenotypes From GWAS Catalog for LHX1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LHX1-DT Gene

Localization for LHX1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LHX1-DT Gene

Pathways & Interactions for LHX1-DT Gene

PathCards logo

SuperPathways for LHX1-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LHX1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LHX1-DT Gene

Drugs & Compounds for LHX1-DT Gene

No Compound Related Data Available

Transcripts for LHX1-DT Gene

mRNA/cDNA for LHX1-DT Gene

19 RNACentral transcripts :
4 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
2 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LHX1-DT Gene

No ASD Table

Relevant External Links for LHX1-DT Gene

GeneLoc Exon Structure for
LHX1-DT

Expression for LHX1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LHX1-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LHX1-DT Gene

Orthologs for LHX1-DT Gene

Evolution for LHX1-DT Gene

ENSEMBL:
Gene Tree for LHX1-DT (if available)
TreeFam:
Gene Tree for LHX1-DT (if available)

No data available for Orthologs for LHX1-DT Gene

Paralogs for LHX1-DT Gene

No data available for Paralogs for LHX1-DT Gene

Variants for LHX1-DT Gene

Additional dbSNP identifiers (rs#s) for LHX1-DT Gene

Additional Variant Information for LHX1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LHX1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LHX1-DT Gene

Disorders for LHX1-DT Gene

Additional Disease Information for LHX1-DT

No disorders were found for LHX1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LHX1-DT Gene

Publications for LHX1-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LHX1-DT Gene

Products for LHX1-DT Gene

Sources for LHX1-DT Gene