Aliases for LGALSL-DT Gene

Data sources for LGALSL-DT Gene:

Subcategory (RNA class) for LGALSL-DT Gene

lncRNA

Aliases for LGALSL-DT Gene

External Ids for LGALSL-DT Gene

Summaries for LGALSL-DT Gene

GeneCards Summary for LGALSL-DT Gene

LGALSL-DT (LGALSL Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LGALSL-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LGALSL-DT Gene

Genomics for LGALSL-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LGALSL-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LGALSL-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LGALSL-DT Gene

Latest Assembly
chr2:64,390,840-64,455,286
(GRCh38/hg38)
Size:
64,447 bases
Orientation:
Minus strand

Previous Assembly
chr2:64,622,354-64,680,932
(GRCh37/hg19 by Ensembl)
Size:
58,579 bases
Orientation:
Minus strand

Genomic View for LGALSL-DT Gene

Genes around LGALSL-DT on UCSC Golden Path with GeneCards custom track
LGALSL-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LGALSL-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LGALSL-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LGALSL-DT Gene

Proteins for LGALSL-DT Gene

Post-translational modifications for LGALSL-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for LGALSL-DT Gene

Domains & Families for LGALSL-DT Gene

Gene Families for LGALSL-DT Gene

genes like me logo Genes that share domains with LGALSL-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LGALSL-DT Gene

Function for LGALSL-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LGALSL-DT Gene

Localization for LGALSL-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LGALSL-DT Gene

Pathways & Interactions for LGALSL-DT Gene

PathCards logo

SuperPathways for LGALSL-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for LGALSL-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LGALSL-DT Gene

Drugs & Compounds for LGALSL-DT Gene

No Compound Related Data Available

Transcripts for LGALSL-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LGALSL-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DBBD4_9606 lncRNA 727 3

Ensembl: ENST00000441630 (view in UCSC) ,

LNCipedia: LGALSL-DT:13,

NONCODE: NONHSAT071113.2,

URS0000EF1C2A_9606 lncRNA 2507 1

Ensembl: ENST00000669208 (view in UCSC) ,

URS0000DB93D2_9606 lncRNA 527 1

Ensembl: ENST00000647983 (view in UCSC) ,

URS0000D576ED_9606 lncRNA 5281 1

LNCipedia: LGALSL-DT:9,

URS0000D5DE77_9606 lncRNA 5281 1

LNCipedia: LGALSL-DT:8,

LGALSL-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LGALSL-DT Gene

No ASD Table

Relevant External Links for LGALSL-DT Gene

GeneLoc Exon Structure for
LGALSL-DT

No data available for mRNA/cDNA for LGALSL-DT Gene

Expression for LGALSL-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LGALSL-DT Gene

Orthologs for LGALSL-DT Gene

Evolution for LGALSL-DT Gene

ENSEMBL:
Gene Tree for LGALSL-DT (if available)
TreeFam:
Gene Tree for LGALSL-DT (if available)

No data available for Orthologs for LGALSL-DT Gene

Paralogs for LGALSL-DT Gene

No data available for Paralogs for LGALSL-DT Gene

Variants for LGALSL-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LGALSL-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LGALSL-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LGALSL-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LGALSL-DT Gene

Disorders for LGALSL-DT Gene

No disorders were found for LGALSL-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LGALSL-DT Gene

Publications for LGALSL-DT Gene

  1. Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis. (PMID: 29568943) Fei Q … Guo A (International journal of molecular medicine 2018) 2 3

Products for LGALSL-DT Gene

Sources for LGALSL-DT Gene