Aliases for LGALS17A Gene

Aliases for LGALS17A Gene

  • Galectin 14 Pseudogene 3
  • Charcot-Leyden Crystal Protein Pseudogene 3 5
  • AC005515.1 5
  • Galectin 13

External Ids for LGALS17A Gene

Previous GeneCards Identifiers for LGALS17A Gene

  • GC19P040172
  • GC19P040175

Summaries for LGALS17A Gene

GeneCards Summary for LGALS17A Gene

LGALS17A (Galectin 14 Pseudogene) is a Pseudogene.

Additional gene information for LGALS17A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LGALS17A Gene

Genomics for LGALS17A Gene

GeneHancer (GH) Regulatory Elements for LGALS17A Gene

Promoters and enhancers for LGALS17A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J039676 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 774.7 -0.8 -789 3.6 SP1 FOXA1 HCFC1 ZNF121 MNT NKRF POLR2A MLLT1 ZNF687 PRDM1 LGALS17A LGALS14 ENSG00000268088 LEUTX FBL CLC EID2B ZNF780A piR-41525-343
GH19J039703 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 12.6 +26.2 26169 3.5 LCORL ETV6 NFIB MLLT1 ZNF687 CREM ZBED1 IKZF1 ZNF544 TRIM22 LGALS14 ZNF780B LGALS17A NUMBL CLC PAK4 EID2B piR-40110-341
GH19J039631 Enhancer 1 Ensembl ENCODE 5.6 -47.9 -47873 0.6 ZNF785 ZNF280D BCL6B ZNF473 SP7 ZSCAN21 ZNF548 ZNF404 CREB1 PRDM10 ENSG00000269519 piR-61101-343 EID2B SUPT5H HNRNPL ZNF546 SPTBN4 PAF1 PLEKHG2 MED29
GH19J039765 Enhancer 0.7 Ensembl ENCODE 7.2 +86.3 86327 0.6 CTCF ZNF280D IKZF1 IKZF2 RCOR1 EED RAD21 SMC3 ZSCAN29 ZNF143 LGALS17A PRX LEUTX piR-61101-344 lnc-CLC-1
GH19J039696 Enhancer 0.9 Ensembl ENCODE 5.4 +17.3 17326 0.6 ZNF362 ZNF280D PRDM1 FOSL2 CREB1 CEBPA CTBP1 ZNF629 CEBPB ZNF501 RPS29P27 CLC EID2B LGALS17A ENSG00000268088
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LGALS17A on UCSC Golden Path with GeneCards custom track

Genomic Locations for LGALS17A Gene

Genomic Locations for LGALS17A Gene
chr19:39,679,374-39,686,373
(GRCh38/hg38)
Size:
7,000 bases
Orientation:
Plus strand
chr19:40,170,014-40,177,013
(GRCh37/hg19)
Size:
7,000 bases
Orientation:
Plus strand

Genomic View for LGALS17A Gene

Genes around LGALS17A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LGALS17A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LGALS17A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LGALS17A Gene

Proteins for LGALS17A Gene

  • Protein details for LGALS17A Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6ZW74-Q6ZW74_HUMAN
    Recommended name:
    Galectin
    Protein Accession:
    Q6ZW74

    Protein attributes for LGALS17A Gene

    Size:
    151 amino acids
    Molecular mass:
    17413 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LGALS17A Gene

Post-translational modifications for LGALS17A Gene

No Post-translational modifications

No data available for DME Specific Peptides for LGALS17A Gene

Domains & Families for LGALS17A Gene

Protein Domains for LGALS17A Gene

Suggested Antigen Peptide Sequences for LGALS17A Gene

GenScript: Design optimal peptide antigens:
  • LOC400696 protein (A1A5E2_HUMAN)
  • LOC400696 protein (Q147W9_HUMAN)
  • cDNA FLJ41505 fis, clone BRTHA2009311, moderately similar to EOSINOPHIL LYSOPHOSPHOLIPASE (Q6ZW74_HUMAN)
genes like me logo Genes that share domains with LGALS17A: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LGALS17A Gene

Function for LGALS17A Gene

Phenotypes From GWAS Catalog for LGALS17A Gene

genes like me logo Genes that share phenotypes with LGALS17A: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LGALS17A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LGALS17A Gene

Localization for LGALS17A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LGALS17A Gene

Pathways & Interactions for LGALS17A Gene

PathCards logo

SuperPathways for LGALS17A Gene

No Data Available

Gene Ontology (GO) - Biological Process for LGALS17A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LGALS17A Gene

Drugs & Compounds for LGALS17A Gene

No Compound Related Data Available

Transcripts for LGALS17A Gene

mRNA/cDNA for LGALS17A Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LGALS17A

Alternative Splicing Database (ASD) splice patterns (SP) for LGALS17A Gene

No ASD Table

Relevant External Links for LGALS17A Gene

GeneLoc Exon Structure for
LGALS17A

Expression for LGALS17A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LGALS17A Gene

mRNA differential expression in normal tissues according to GTEx for LGALS17A Gene

This gene is overexpressed in Brain - Substantia nigra (x19.1).

SOURCE GeneReport for Unigene cluster for LGALS17A Gene:

Hs.456377
genes like me logo Genes that share expression patterns with LGALS17A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LGALS17A Gene

Orthologs for LGALS17A Gene

Evolution for LGALS17A Gene

ENSEMBL:
Gene Tree for LGALS17A (if available)
TreeFam:
Gene Tree for LGALS17A (if available)

No data available for Orthologs for LGALS17A Gene

Paralogs for LGALS17A Gene

(5) SIMAP similar genes for LGALS17A Gene using alignment to 1 proteins:

  • Q6ZW74_HUMAN
genes like me logo Genes that share paralogs with LGALS17A: view

No data available for Paralogs for LGALS17A Gene

Variants for LGALS17A Gene

Sequence variations from dbSNP and Humsavar for LGALS17A Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000099740 -- 39,678,949(+) C/G upstream_transcript_variant
rs1000557581 -- 39,682,283(+) C/T intron_variant
rs1001378432 -- 39,683,102(+) TTTTTTTTT/TTTTTTT/TTTTTTTTTT intron_variant
rs1001452387 -- 39,677,769(+) G/A upstream_transcript_variant
rs1001459343 -- 39,685,820(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LGALS17A Gene

Variant ID Type Subtype PubMed ID
dgv3529n100 CNV loss 25217958
dgv521e201 CNV deletion 23290073
esv2718554 CNV deletion 23290073
esv3998 CNV loss 18987735
nsv2482 CNV deletion 18451855
nsv579511 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LGALS17A Gene

Disorders for LGALS17A Gene

No disorders were found for LGALS17A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LGALS17A Gene

Publications for LGALS17A Gene

  1. A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death. (PMID: 19497882) Than NG … Wildman DE (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 13 56
  2. A comprehensive family-based replication study of schizophrenia genes. (PMID: 23894747) Aberg KA … van den Oord EJ (JAMA psychiatry 2013) 3 56
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LGALS17A Gene

Products for LGALS17A Gene

Sources for LGALS17A Gene