Aliases for LENG8-AS1 Gene

Data sources for LENG8-AS1 Gene:

RNA type for LENG8-AS1 Gene

lncRNA

Aliases for LENG8-AS1 Gene

External Ids for LENG8-AS1 Gene

Previous GeneCards Identifiers for LENG8-AS1 Gene

  • GC19M054956
  • GC00U936122
  • GC19M054444

Summaries for LENG8-AS1 Gene

GeneCards Summary for LENG8-AS1 Gene

LENG8-AS1 (LENG8 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LENG8-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for LENG8-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LENG8-AS1 Gene

Genomics for LENG8-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LENG8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J054448 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 283.5 -0.3 -262 4.6 BCLAF1 SP1 ZNF207 ZNF600 IKZF1 NCOR1 MYC ZNF580 ZNF592 ATF2 LENG8-AS1 LENG8 HSALNG0127531 PRPF31 CNOT3 ENSG00000267838 LENG9 MYADM KMT5C LENG1
GH19J055215 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 179.4 -767.7 -767660 2.9 SP1 MYC NCOR1 IKZF1 ZNF600 JUND ZNF580 ZNF592 ZMYM3 ATF2 ENSG00000267649 ENSG00000286230 LENG8-AS1 U2AF2 LENG8 ENSG00000235681 ENSG00000267523 SSC5D ZNF580 KMT5C
GH19J054199 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 107.4 +243.5 243456 12.4 BCLAF1 SP1 ZNF207 ZNF600 NCOR1 MYC IKZF1 SSRP1 ZNF580 ZNF592 RPS9 HSALNG0127488 PRPF31 LENG8-AS1 LENG8 CNOT3 ZNF525 ENSG00000235681 ZNF845 ZNF761
GH19J055246 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 68.6 -804.8 -804814 14.5 BCLAF1 SP1 ZNF207 MYC NCOR1 IKZF1 ZNF600 JUND ZNF580 ZNF592 PPP6R1 LENG8 LENG8-AS1 ENSG00000235681 ZNF581 ENSG00000267523 ZNF628 ENSG00000267096 HSPBP1 RPL28
GH19J055337 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 56 -890.9 -890866 4.2 SP1 ZNF207 IKZF1 JUND ZNF580 ATF2 CEBPA ZNF223 ZNF10 ATF3 KMT5C ENSG00000276831 HSALNG0127644 LENG8-AS1 LENG8 ENSG00000235681 ENSG00000267523 ENSG00000267096 ZNF580 FAM71E2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LENG8-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LENG8-AS1 Gene

Latest Assembly
chr19:54,437,730-54,449,045
(GRCh38/hg38)
Size:
11,316 bases
Orientation:
Minus strand

Previous Assembly
chr19:54,955,994-54,960,216
(GRCh37/hg19 by Entrez Gene)
Size:
4,223 bases
Orientation:
Minus strand

chr19:54,955,991-54,960,223
(GRCh37/hg19 by Ensembl)
Size:
4,233 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr19(ALT_REF_LOCI_1):351,326-355,550 (-)
  • chr19(ALT_REF_LOCI_7):349,503-353,724 (-)
  • chr19(ALT_REF_LOCI_9):427,108-431,330 (-)

Genomic View for LENG8-AS1 Gene

Genes around LENG8-AS1 on UCSC Golden Path with GeneCards custom track
LENG8-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LENG8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LENG8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LENG8-AS1 Gene

Proteins for LENG8-AS1 Gene

Post-translational modifications for LENG8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LENG8-AS1 Gene

Domains & Families for LENG8-AS1 Gene

Gene Families for LENG8-AS1 Gene

genes like me logo Genes that share domains with LENG8-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LENG8-AS1 Gene

Function for LENG8-AS1 Gene

Phenotypes From GWAS Catalog for LENG8-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LENG8-AS1 Gene

Localization for LENG8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LENG8-AS1 Gene

Pathways & Interactions for LENG8-AS1 Gene

PathCards logo

SuperPathways for LENG8-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LENG8-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LENG8-AS1 Gene

Drugs & Compounds for LENG8-AS1 Gene

No Compound Related Data Available

Transcripts for LENG8-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LENG8-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000780E79_9606 lncRNA 874 3

Ensembl: ENST00000429922 (view in UCSC) ,

LNCipedia: LENG8-AS1:3,

NONCODE: NONHSAT067919.2,

URS0000765562_9606 lncRNA 584 3

Ensembl: ENST00000416022 (view in UCSC) ,

LNCipedia: LENG8-AS1:6,

NONCODE: NONHSAT067920.2,

URS000076316E_9606 lncRNA 466 3

Ensembl: ENST00000448978 (view in UCSC) ,

LNCipedia: LENG8-AS1:1,

NONCODE: NONHSAT067923.2,

URS00007E335F_9606 lncRNA 892 2

RefSeq: NR_126418,

LNCipedia: LENG8-AS1:2,

URS0000E7C2CB_9606 lncRNA 781 1

Ensembl: ENST00000652740 (view in UCSC) ,

LENG8-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LENG8-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LENG8-AS1 Gene

No ASD Table

Relevant External Links for LENG8-AS1 Gene

GeneLoc Exon Structure for
LENG8-AS1

Expression for LENG8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LENG8-AS1 Gene

genes like me logo Genes that share expression patterns with LENG8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LENG8-AS1 Gene

Orthologs for LENG8-AS1 Gene

Evolution for LENG8-AS1 Gene

ENSEMBL:
Gene Tree for LENG8-AS1 (if available)
TreeFam:
Gene Tree for LENG8-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for LENG8-AS1

No data available for Orthologs for LENG8-AS1 Gene

Paralogs for LENG8-AS1 Gene

No data available for Paralogs for LENG8-AS1 Gene

Variants for LENG8-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LENG8-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LENG8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LENG8-AS1
Leiden Open Variation Database (LOVD)
LENG8-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LENG8-AS1 Gene

Disorders for LENG8-AS1 Gene

Additional Disease Information for LENG8-AS1

No disorders were found for LENG8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LENG8-AS1 Gene

Publications for LENG8-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LENG8-AS1 Gene

Sources for LENG8-AS1 Gene